Mercurial > repos > bgruening > hicexplorer_hiccompartmentspolarization

comparison hicCompartmentalization.xml @ 7:bd6e26c47853 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
author iuc
date Tue, 10 Jan 2023 18:48:44 +0000
parents ed3dea19c464
children 3a6a5381db36
comparison
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6:ed3dea19c464 7:bd6e26c47853
56 </data> 56 </data>
57 </outputs> 57 </outputs>
58 <tests> 58 <tests>
59 <test> 59 <test>
60 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> 60 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
61 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> 61 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
62 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> 62 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
63 </test> 63 </test>
64 <test> 64 <test>
65 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> 65 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
66 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> 66 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
67 <param name="quantile" value='30' /> 67 <param name="quantile" value='30' />
68 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> 68 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
69 </test> 69 </test>
70 <test> 70 <test>
71 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" /> 71 <param name="matrix_h5_cooler_multiple" value="hicTransform/obs_exp_norm.h5" />
72 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" /> 72 <param name="pca" value="hicCompartmentsPolarization/pca1.bedgraph" ftype="bedgraph" />
73 <param name="outliers" value='1.0' /> 73 <param name="outliers" value='1.0' />
74 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" /> 74 <output name="outFileName" file="hicCompartmentsPolarization/compartmentsPolarizationRatio.png" ftype="png" compare="sim_size" />
75 </test> 75 </test>
76 </tests> 76 </tests>
77 <help><![CDATA[ 77 <help><![CDATA[