Mercurial > repos > bgruening > hicexplorer_hiccorrectmatrix

comparison hicCorrectMatrix.xml @ 8:f7d344dacfeb draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 0456f085bac2c88b8cbddfcf12b02776d2a0d457
author iuc
date Wed, 07 Mar 2018 03:24:24 -0500
parents 1612e9458940
children ac80bd0a96ca
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7:1612e9458940 8:f7d344dacfeb
1 <tool id="hicexplorer_hiccorrectmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.1"> 1 <tool id="hicexplorer_hiccorrectmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
2 <description>Runs Dekker's iterative correction over a hic matrix.</description> 2 <description>Runs Dekker's iterative correction over a hic matrix.</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">hicCorrectMatrix</token> 4 <token name="@BINARY@">hicCorrectMatrix</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
136 <repeat name="chromosomes"> 136 <repeat name="chromosomes">
137 <param name="chromosome" value="chr3LHet"/> 137 <param name="chromosome" value="chr3LHet"/>
138 </repeat> 138 </repeat>
139 <param name='outputFormat' value='h5'/> 139 <param name='outputFormat' value='h5'/>
140 140
141 <output name="outFileName_h5" file="hicCorrectMatrix_result1.npz.h5" ftype="h5" compare="sim_size"/> 141 <output name="outFileName" file="hicCorrectMatrix_result1.npz.h5" ftype="h5" compare="sim_size"/>
142 </test> 142 </test>
143 <test> 143 <test>
144 <param name="matrix_h5_cooler" value="small_test_matrix.h5"/> 144 <param name="matrix_h5_cooler" value="small_test_matrix.h5"/>
145 <param name="mode_selector" value="diagnostic_plot"/> 145 <param name="mode_selector" value="diagnostic_plot"/>
146 <repeat name="chromosomes"> 146 <repeat name="chromosomes">