# HG changeset patch
# User iuc
# Date 1528573063 14400
# Node ID 92fc291ceb1a968034178f7eda8d71389e3be144
# Parent bfa1c014f64a638dc803f6d04d3835f0a0f46e39
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2307743fd10f0babde52eec30289fe1682236287
diff -r bfa1c014f64a -r 92fc291ceb1a hicCorrectMatrix.xml
--- a/hicCorrectMatrix.xml Fri Apr 27 08:38:17 2018 -0400
+++ b/hicCorrectMatrix.xml Sat Jun 09 15:37:43 2018 -0400
@@ -220,7 +220,7 @@
| For more information about HiCExplorer please consider our documentation on readthedocs.io_
.. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
-.. _`Imakaev et al. (2012)`: http://doi.org/doi:10.1038/nmeth.2148
+.. _`Imakaev et al. (2012)`: https://doi.org/10.1038/nmeth.2148
]]>
diff -r bfa1c014f64a -r 92fc291ceb1a macros.xml
--- a/macros.xml Fri Apr 27 08:38:17 2018 -0400
+++ b/macros.xml Sat Jun 09 15:37:43 2018 -0400
@@ -1,6 +1,6 @@
\${GALAXY_SLOTS:-4}
- 2.1.2
+ 2.1.4
#if $use_range.select_use_range == "yes_use_range":
--range $range_min:$range_max
diff -r bfa1c014f64a -r 92fc291ceb1a test-data/Li_chrX30-35_cool.png
Binary file test-data/Li_chrX30-35_cool.png has changed
diff -r bfa1c014f64a -r 92fc291ceb1a test-data/Li_et_al_2015.cool
Binary file test-data/Li_et_al_2015.cool has changed
diff -r bfa1c014f64a -r 92fc291ceb1a test-data/distVsCounts.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/distVsCounts.txt Sat Jun 09 15:37:43 2018 -0400
@@ -0,0 +1,62 @@
+ Chromosome Contacts Distance Matrix
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+1 all 1.6689429928741093 50000 small_test_matrix_50kb_res.h5
+2 all 0.7796660703637448 100000 small_test_matrix_50kb_res.h5
+3 all 0.4811377245508982 150000 small_test_matrix_50kb_res.h5
+4 all 0.3259170174383644 200000 small_test_matrix_50kb_res.h5
+5 all 0.2530193236714976 250000 small_test_matrix_50kb_res.h5
+6 all 0.19278569263413156 300000 small_test_matrix_50kb_res.h5
+7 all 0.1475958612294583 350000 small_test_matrix_50kb_res.h5
+8 all 0.12736713500305435 400000 small_test_matrix_50kb_res.h5
+9 all 0.11737664725712535 450000 small_test_matrix_50kb_res.h5
+10 all 0.09348093480934809 500000 small_test_matrix_50kb_res.h5
+11 all 0.08145634063560629 550000 small_test_matrix_50kb_res.h5
+12 all 0.07492260061919505 600000 small_test_matrix_50kb_res.h5
+13 all 0.06803355079217148 650000 small_test_matrix_50kb_res.h5
+14 all 0.06016209476309227 700000 small_test_matrix_50kb_res.h5
+15 all 0.05411323115420707 750000 small_test_matrix_50kb_res.h5
+16 all 0.0514752040175769 800000 small_test_matrix_50kb_res.h5
+17 all 0.043464566929133856 850000 small_test_matrix_50kb_res.h5
+18 all 0.04835651074589128 900000 small_test_matrix_50kb_res.h5
+19 all 0.04281636536631779 950000 small_test_matrix_50kb_res.h5
+20 all 0.04010184595798854 1000000 small_test_matrix_50kb_res.h5
+21 all 0.034493771957840945 1050000 small_test_matrix_50kb_res.h5
+22 all 0.035256410256410256 1100000 small_test_matrix_50kb_res.h5
+23 all 0.030556449018977163 1150000 small_test_matrix_50kb_res.h5
+24 all 0.027437056165267915 1200000 small_test_matrix_50kb_res.h5
+25 all 0.030774214447683836 1250000 small_test_matrix_50kb_res.h5
+26 all 0.03153446033810143 1300000 small_test_matrix_50kb_res.h5
+27 all 0.026753670473083198 1350000 small_test_matrix_50kb_res.h5
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+31 all 0.026124338624338623 1550000 small_test_matrix_50kb_res.h5
+32 all 0.025547445255474453 1600000 small_test_matrix_50kb_res.h5
+33 all 0.0262982689747004 1650000 small_test_matrix_50kb_res.h5
+34 all 0.018036072144288578 1700000 small_test_matrix_50kb_res.h5
+35 all 0.028820375335120642 1750000 small_test_matrix_50kb_res.h5
+36 all 0.024546065904505716 1800000 small_test_matrix_50kb_res.h5
+37 all 0.025303643724696356 1850000 small_test_matrix_50kb_res.h5
+38 all 0.01963439404197698 1900000 small_test_matrix_50kb_res.h5
+39 all 0.020380434782608696 1950000 small_test_matrix_50kb_res.h5
+40 all 0.026244035446489435 2000000 small_test_matrix_50kb_res.h5
+41 all 0.024623803009575923 2050000 small_test_matrix_50kb_res.h5
+42 all 0.024365133836650652 2100000 small_test_matrix_50kb_res.h5
+43 all 0.01928374655647383 2150000 small_test_matrix_50kb_res.h5
+44 all 0.017622667588113337 2200000 small_test_matrix_50kb_res.h5
+45 all 0.015256588072122053 2250000 small_test_matrix_50kb_res.h5
+46 all 0.021224773834377174 2300000 small_test_matrix_50kb_res.h5
+47 all 0.01920391061452514 2350000 small_test_matrix_50kb_res.h5
+48 all 0.014365802382620883 2400000 small_test_matrix_50kb_res.h5
+49 all 0.014416315049226441 2450000 small_test_matrix_50kb_res.h5
+50 all 0.016231474947071278 2500000 small_test_matrix_50kb_res.h5
+51 all 0.013456090651558074 2550000 small_test_matrix_50kb_res.h5
+52 all 0.01492007104795737 2600000 small_test_matrix_50kb_res.h5
+53 all 0.020306376914855716 2650000 small_test_matrix_50kb_res.h5
+54 all 0.013576277241872096 2700000 small_test_matrix_50kb_res.h5
+55 all 0.0146900752418488 2750000 small_test_matrix_50kb_res.h5
+56 all 0.017966223499820338 2800000 small_test_matrix_50kb_res.h5
+57 all 0.017297297297297298 2850000 small_test_matrix_50kb_res.h5
+58 all 0.018070112034694615 2900000 small_test_matrix_50kb_res.h5
+59 all 0.013773106197897789 2950000 small_test_matrix_50kb_res.h5
+60 all 0.01599418393311523 3000000 small_test_matrix_50kb_res.h5