Mercurial > repos > bgruening > hicexplorer_hiccorrelate

comparison macros.xml @ 13:5fe7376d9ff0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:54:23 -0500
parents e89d515c3594
children 5df41deff008
comparison
equal deleted inserted replaced
12:e89d515c3594 13:5fe7376d9ff0
1 <macros> 1 <macros>
2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
3 <token name="@WRAPPER_VERSION@">3.3.1</token> 3 <token name="@WRAPPER_VERSION@">3.4.1</token>
4 <token name="@USE_RANGE@"> 4 <token name="@USE_RANGE@">
5 #if $use_range.select_use_range == "yes_use_range": 5 #if $use_range.select_use_range == "yes_use_range":
6 --range $range_min:$range_max 6 --range $range_min:$range_max
7 #end if 7 #end if
8 </token> 8 </token>
359 <xml name='convertFormat_single_macro'> 359 <xml name='convertFormat_single_macro'>
360 <conditional name="inputFormat_conditional"> 360 <conditional name="inputFormat_conditional">
361 <param name="inputFormat_selector" type="select" label="Choose input file type"> 361 <param name="inputFormat_selector" type="select" label="Choose input file type">
362 <option value="optionCool" selected="True">cool</option> 362 <option value="optionCool" selected="True">cool</option>
363 <option value="optionH5">h5</option> 363 <option value="optionH5">h5</option>
364 <!-- <option value="optionHic">hic</option> --> 364 <option value="optionHic">hic</option>
365 <option value="optionHomer">Homer</option> 365 <option value="optionHomer">Homer</option>
366 <option value="optionHicpro">HiCPro</option> 366 <option value="optionHicpro">HiCPro</option>
367 </param> 367 </param>
368 <when value="optionCool"> 368 <when value="optionCool">
369 <expand macro='matrix_h5_cooler_macro' /> 369 <expand macro='matrix_h5_cooler_macro' />
374 374
375 </when> 375 </when>
376 <when value="optionH5"> 376 <when value="optionH5">
377 <expand macro='matrix_h5_cooler_macro' /> 377 <expand macro='matrix_h5_cooler_macro' />
378 </when> 378 </when>
379 <!-- <when value="optionHic"> 379 <when value="optionHic">
380 <param name='matrixHic' type='data' format='binary' label='.hic matrix'/> 380 <param name='matrixHic' type='data' format='hic' label='.hic matrix'/>
381 <param name='resolutions' type='text' label='List of resolutions'/> 381 <param name='resolutions' type='text' label='List of resolutions'/>
382 </when> --> 382 </when>
383 383
384 <when value="optionHomer"> 384 <when value="optionHomer">
385 <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/> 385 <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/>
386 </when> 386 </when>
387 387