Mercurial > repos > bgruening > hicexplorer_hicdetectloops
comparison test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 3:1119cdd14ddb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
| author | iuc |
|---|---|
| date | Tue, 24 Mar 2020 14:00:59 -0400 |
| parents | |
| children | c3f9037423bd |
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| 2:ce8d154fc6b5 | 3:1119cdd14ddb |
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| 1 # Created with chicQualityControl version 3.4.3 | |
| 2 # QC report for matrices: 0_matrix.cool 1_matrix.cool | |
| 3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. | |
| 4 | |
| 5 Number of reference points: 43 | |
| 6 Number of accepted reference points: 35 | |
| 7 Number of rejected reference points: 8 | |
| 8 Number of faulty reference points: 0 | |
| 9 | |
| 10 | |
| 11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. | |
| 12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. | |
| 13 Please check the results of hicInfo to validate this for your data. |