Mercurial > repos > bgruening > hicexplorer_hicdetectloops

directory /test-data/ @ 6:c3f9037423bd draft

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[up] drwxr-xr-x
dir. cHi-C/ drwxr-xr-x
dir. find_TADs/ drwxr-xr-x
dir. hicAggregateContacts/ drwxr-xr-x
dir. hicAverageRegions/ drwxr-xr-x
dir. hicCompartmentsPolarization/ drwxr-xr-x
dir. hicConvertFormat/ drwxr-xr-x
dir. hicCorrectMatrix/ drwxr-xr-x
dir. hicDetectLoops/ drwxr-xr-x
dir. hicDifferentialTAD/ drwxr-xr-x
dir. hicFindRestrictionSites/ drwxr-xr-x
dir. hicHyperoptDetectLoops/ drwxr-xr-x
dir. hicInfo/ drwxr-xr-x
dir. hicMergeDomains/ drwxr-xr-x
dir. hicMergeLoops/ drwxr-xr-x
dir. hicPCA/ drwxr-xr-x
dir. hicPlotAverageRegions/ drwxr-xr-x
dir. hicPlotMatrix/ drwxr-xr-x
dir. hicPlotSVL/ drwxr-xr-x
dir. hicQuickQC/ drwxr-xr-x
dir. hicTransform/ drwxr-xr-x
dir. hicValidateLocations/ drwxr-xr-x
file DpnII_10k.bed 133101 -rw-r--r--
file Li_et_al_2015.cool 41665 -rw-r--r--
file distVsCounts.txt 35194 -rw-r--r--
file dm3_genes.bed.gz 98624 -rw-r--r--
file domains.bed 33733 -rw-r--r--
file hicAggregateContacts_results1.png 38696 -rw-r--r--
file hicCorrelate_heatmap_result1.png 17518 -rw-r--r--
file hicCorrelate_scatter_result1.png 5931 -rw-r--r--
file hicInfo_output.txt 354 -rw-r--r--
file hicPlotDistVsCounts_result1.png 21943 -rw-r--r--
file hicPlotDistVsCounts_result2.png 231839 -rw-r--r--
file li_32-33mb_interactions.bedgraph 111 -rw-r--r--
file li_viewpoint_32-33Mb.png 86258 -rw-r--r--
file li_viewpoint_32Mb.png 85635 -rw-r--r--
file multiNone_domains.bed 112960 -rw-r--r--
file raw_qc_report 882 -rw-r--r--
file regions.bed 46 -rw-r--r--
file small_test_R1_unsorted.sam 206058 -rw-r--r--
file small_test_R2_unsorted.sam 202880 -rw-r--r--
file small_test_matrix.cool 172382 -rw-r--r--
file small_test_matrix.h5 275687 -rw-r--r--
file small_test_matrix_result_sorted.bam 28935 -rw-r--r--