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hicexplorer_hicdetectloops
directory /test-data/ @ 9:
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cHi-C/
drwxr-xr-x
find_TADs/
drwxr-xr-x
hicAggregateContacts/
drwxr-xr-x
hicAverageRegions/
drwxr-xr-x
hicCompartmentsPolarization/
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hicConvertFormat/
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hicCorrectMatrix/
drwxr-xr-x
hicDetectLoops/
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hicDifferentialTAD/
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hicFindRestrictionSites/
drwxr-xr-x
hicHyperoptDetectLoops/
drwxr-xr-x
hicInfo/
drwxr-xr-x
hicInterIntraTAD/
drwxr-xr-x
hicMergeDomains/
drwxr-xr-x
hicMergeLoops/
drwxr-xr-x
hicPCA/
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hicPlotAverageRegions/
drwxr-xr-x
hicPlotMatrix/
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hicPlotSVL/
drwxr-xr-x
hicQuickQC/
drwxr-xr-x
hicTransform/
drwxr-xr-x
hicValidateLocations/
drwxr-xr-x
DpnII_10k.bed
133101
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Li_et_al_2015.cool
41665
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distVsCounts.txt
41209
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dm3_genes.bed.gz
98624
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domains.bed
33733
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hicAggregateContacts_results1.png
40408
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hicCorrelate_heatmap_result1.png
17045
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hicCorrelate_scatter_result1.png
5958
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hicInfo_output.txt
354
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hicPlotDistVsCounts_result1.png
21911
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hicPlotDistVsCounts_result2.png
232452
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li_32-33mb_interactions.bedgraph
111
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li_viewpoint_32-33Mb.png
86047
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li_viewpoint_32Mb.png
85568
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multiNone_domains.bed
112960
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raw_qc_report
912
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regions.bed
46
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small_test_R1_unsorted.sam
206058
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small_test_R2_unsorted.sam
202880
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small_test_matrix.cool
172382
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small_test_matrix.h5
275687
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small_test_matrix_result_sorted.bam
28449
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