# HG changeset patch
# User iuc
# Date 1673378416 0
# Node ID 0d6c2ff54c767c614cc53e634c6e485dc722f214
# Parent  c3f9037423bd9eaee3458d2e9bf5b99d605398d7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02

diff -r c3f9037423bd -r 0d6c2ff54c76 hicDetectLoops.xml
--- a/hicDetectLoops.xml	Tue Mar 16 15:32:15 2021 +0000
+++ b/hicDetectLoops.xml	Tue Jan 10 19:20:16 2023 +0000
@@ -71,7 +71,7 @@
         <param argument="--expected" type="select" label="Method to compute the expected value">
             <option value="mean" selected="True">mean</option>
             <option value="mean_nonzero">mean_nonzero</option>
-            <option value="mean_nonzero">mean_nonzero_ligation</option>
+            <option value="mean_nonzero_ligation">mean_nonzero_ligation</option>
         </param>
     </inputs>
     <outputs>
diff -r c3f9037423bd -r 0d6c2ff54c76 macros.xml
--- a/macros.xml	Tue Mar 16 15:32:15 2021 +0000
+++ b/macros.xml	Tue Jan 10 19:20:16 2023 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
     <token name="@TOOL_VERSION@">3.6</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $use_range.range_min:$use_range.range_max
@@ -333,7 +333,7 @@
         <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)" />
     </xml>
     <xml name="xMax">
-        <param argument="--xMax" name="xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
+        <param argument="--xMax" type="integer" optional="true" value="" label="Max value for the x-axis in counts per bin" />
     </xml>
     <xml name="filterThreshold">
         <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect." />