Mercurial > repos > bgruening > hicexplorer_hichyperoptdetectloops
comparison test-data/raw_qc_report_micro-c @ 5:3e5c86c2f80d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2024 18:23:09 +0000 |
| parents | |
| children |
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| 4:bb8849fca57c | 5:3e5c86c2f80d |
|---|---|
| 1 | |
| 2 File matrix.cool | |
| 3 Sequenced reads 983 | |
| 4 Max library insert size 1000 | |
| 5 | |
| 6 # count (percentage w.r.t. total sequenced reads) | |
| 7 Pairs mappable, unique and high quality 300 (30.52) | |
| 8 Hi-C contacts 215 (21.87) | |
| 9 One mate unmapped 506 (51.48) | |
| 10 One mate not unique 13 (1.32) | |
| 11 Low mapping quality 164 (16.68) | |
| 12 | |
| 13 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
| 14 same fragment 85 (28.33) | |
| 15 duplicated pairs 0 (0.00) | |
| 16 | |
| 17 # count (percentage w.r.t. total valid pairs used) | |
| 18 inter chromosomal 24 (11.16) | |
| 19 Intra short range (< 20kb) 61 (28.37) | |
| 20 Intra long range (>= 20kb) 130 (60.47) | |
| 21 Read pair type: inward pairs 42 (19.53) | |
| 22 Read pair type: outward pairs 66 (30.70) | |
| 23 Read pair type: left pairs 48 (22.33) | |
| 24 Read pair type: right pairs 35 (16.28) |