Mercurial > repos > bgruening > hicexplorer_hichyperoptdetectloops
diff test-data/hicQuickQC/QC.log @ 0:dde6b320a34b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
| author | bgruening |
|---|---|
| date | Tue, 16 Mar 2021 20:14:14 +0000 |
| parents | |
| children | 7f7c6ead2d0d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicQuickQC/QC.log Tue Mar 16 20:14:14 2021 +0000 @@ -0,0 +1,29 @@ + +File /tmp/tmp12xmnm2f.h5 +Sequenced reads 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Hi-C contacts 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +Low mapping quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end GATC 1 (0.33) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 84 (28.00) +self circle 33 (11.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +Intra short range (< 20kb) 61 (28.37) +Intra long range (>= 20kb) 130 (60.47) +Read pair type: inward pairs 42 (19.53) +Read pair type: outward pairs 66 (30.70) +Read pair type: left pairs 48 (22.33) +Read pair type: right pairs 35 (16.28)