Mercurial > repos > bgruening > hicexplorer_hichyperoptdetectloops

view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 2:7f7c6ead2d0d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:36:42 +0000
parents dde6b320a34b
children 409396ea5cf0
line wrap: on
line source

# Created with chicQualityControl version 3.7.2
# QC report for matrices: 0_matrix.cool 1_matrix.cool 
#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.

Number of reference points: 43
Number of accepted reference points: 35
Number of rejected reference points: 8
Number of faulty reference points: 0


A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
Please check the results of hicInfo to validate this for your data.