Mercurial > repos > bgruening > hicexplorer_hichyperoptdetectloops
view test-data/hicQuickQC/QC.log @ 1:89fb1aab755b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
| author | iuc |
|---|---|
| date | Thu, 12 Jan 2023 17:22:44 +0000 |
| parents | dde6b320a34b |
| children | 7f7c6ead2d0d |
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File /tmp/tmp12xmnm2f.h5 Sequenced reads 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Hi-C contacts 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) Low mapping quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end GATC 1 (0.33) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 84 (28.00) self circle 33 (11.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) Intra short range (< 20kb) 61 (28.37) Intra long range (>= 20kb) 130 (60.47) Read pair type: inward pairs 42 (19.53) Read pair type: outward pairs 66 (30.70) Read pair type: left pairs 48 (22.33) Read pair type: right pairs 35 (16.28)