Mercurial > repos > bgruening > hicexplorer_hicmergeloops
diff hicMergeLoops.xml @ 8:1511a8ebe906 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 11:01:55 +0000 |
| parents | 94b552c6830a |
| children | ed900cd4a0a9 |
line wrap: on
line diff
--- a/hicMergeLoops.xml Tue Jan 10 18:52:50 2023 +0000 +++ b/hicMergeLoops.xml Wed Oct 18 11:01:55 2023 +0000 @@ -17,16 +17,16 @@ --outFileName merged_loops.bedgraph ]]> </command> <inputs> - <param argument="--inputFiles" type="data" format='bed' multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources, + <param argument="--inputFiles" type="data" format="bed" multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources, please follow \'chr start end chr start end\' format and remove any header." /> - <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help='The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000.' /> + <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help="The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000." /> </inputs> <outputs> <data name="mergedLoops" from_work_dir="merged_loops.bedgraph" format="bed" label="${tool.name} on [${on_string}]: Merged loops" /> </outputs> <tests> <test> - <param name="inputFiles" ftype='bed' value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" /> + <param name="inputFiles" ftype="bed" value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" /> <param name="lowestResolution" value="25000" /> <output name="mergedLoops" file="hicMergeLoops/gm12878_all.bedgraph" ftype="bed" /> </test>