Mercurial > repos > bgruening > hicexplorer_hicmergematrixbins
comparison macros.xml @ 12:faab8edcaac9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author | bgruening |
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date | Wed, 05 Feb 2020 20:00:33 -0500 |
parents | 49c8055f6830 |
children | c5280c9117f3 |
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11:49c8055f6830 | 12:faab8edcaac9 |
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1 <macros> | 1 <macros> |
2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> | 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> |
3 <token name="@WRAPPER_VERSION@">3.3.1</token> | 3 <token name="@WRAPPER_VERSION@">3.4.1</token> |
4 <token name="@USE_RANGE@"> | 4 <token name="@USE_RANGE@"> |
5 #if $use_range.select_use_range == "yes_use_range": | 5 #if $use_range.select_use_range == "yes_use_range": |
6 --range $range_min:$range_max | 6 --range $range_min:$range_max |
7 #end if | 7 #end if |
8 </token> | 8 </token> |
359 <xml name='convertFormat_single_macro'> | 359 <xml name='convertFormat_single_macro'> |
360 <conditional name="inputFormat_conditional"> | 360 <conditional name="inputFormat_conditional"> |
361 <param name="inputFormat_selector" type="select" label="Choose input file type"> | 361 <param name="inputFormat_selector" type="select" label="Choose input file type"> |
362 <option value="optionCool" selected="True">cool</option> | 362 <option value="optionCool" selected="True">cool</option> |
363 <option value="optionH5">h5</option> | 363 <option value="optionH5">h5</option> |
364 <!-- <option value="optionHic">hic</option> --> | 364 <option value="optionHic">hic</option> |
365 <option value="optionHomer">Homer</option> | 365 <option value="optionHomer">Homer</option> |
366 <option value="optionHicpro">HiCPro</option> | 366 <option value="optionHicpro">HiCPro</option> |
367 </param> | 367 </param> |
368 <when value="optionCool"> | 368 <when value="optionCool"> |
369 <expand macro='matrix_h5_cooler_macro' /> | 369 <expand macro='matrix_h5_cooler_macro' /> |
374 | 374 |
375 </when> | 375 </when> |
376 <when value="optionH5"> | 376 <when value="optionH5"> |
377 <expand macro='matrix_h5_cooler_macro' /> | 377 <expand macro='matrix_h5_cooler_macro' /> |
378 </when> | 378 </when> |
379 <!-- <when value="optionHic"> | 379 <when value="optionHic"> |
380 <param name='matrixHic' type='data' format='binary' label='.hic matrix'/> | 380 <param name='matrixHic' type='data' format='hic' label='.hic matrix'/> |
381 <param name='resolutions' type='text' label='List of resolutions'/> | 381 <param name='resolutions' type='text' label='List of resolutions'/> |
382 </when> --> | 382 </when> |
383 | 383 |
384 <when value="optionHomer"> | 384 <when value="optionHomer"> |
385 <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/> | 385 <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/> |
386 </when> | 386 </when> |
387 | 387 |