Mercurial > repos > bgruening > hicexplorer_hicmergematrixbins

diff hicMergeMatrixBins.xml @ 20:11fa44ee0603 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
author iuc
date Mon, 01 Jul 2024 20:13:46 +0000
parents 977dc15add20
children
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--- a/hicMergeMatrixBins.xml	Wed Oct 18 10:38:18 2023 +0000
+++ b/hicMergeMatrixBins.xml	Mon Jul 01 20:13:46 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>merge adjacent bins from a Hi-C contact matrix to reduce its resolution</description>
     <macros>
         <token name="@BINARY@">hicMergeMatrixBins</token>
@@ -11,8 +11,8 @@
             --matrix 'matrix.$matrix_h5_cooler.ext'
             --numBins $numBins
             $runningWindow
-            --outFileName 'matrix.$matrix_h5_cooler.ext'
-        && mv 'matrix.$matrix_h5_cooler.ext' matrix
+            --outFileName 'out_matrix.$matrix_h5_cooler.ext'
+        && mv 'out_matrix.$matrix_h5_cooler.ext' matrix
 ]]>
     </command>
     <inputs>