Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts

comparison test-data/raw_qc_report @ 20:6326cd29c1c3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:16:53 +0000
parents e2971589184b
children
comparison
equal deleted inserted replaced
19:a4a413dcc59d 20:6326cd29c1c3
1 1
2 File matrix.h5 2 File matrix.cool
3 Sequenced reads 983 3 Sequenced reads 983
4 Min rest. site distance 300 4 Min rest. site distance 300
5 Max library insert size 1000 5 Max library insert size 1000
6 6
7 # count (percentage w.r.t. total sequenced reads) 7 # count (percentage w.r.t. total sequenced reads)
10 One mate unmapped 506 (51.48) 10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32) 11 One mate not unique 13 (1.32)
12 Low mapping quality 164 (16.68) 12 Low mapping quality 164 (16.68)
13 13
14 # count (percentage w.r.t. mappable, unique and high quality pairs) 14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end GATC 1 (0.33) 15 dangling end GATC (restriction sequence GATC) 1 (0.33)
16 self ligation (removed) 0 (0.00) 16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00) 17 One mate not close to rest site 0 (0.00)
18 same fragment 84 (28.00) 18 same fragment 84 (28.00)
19 self circle 33 (11.00) 19 self circle 33 (11.00)
20 duplicated pairs 0 (0.00) 20 duplicated pairs 0 (0.00)