Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts

comparison hicPlotDistVsCounts.xml @ 9:c886ddb8e122 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dddc0b9035b8edadfd45d74b01aeca245c2725d7
author iuc
date Fri, 27 Apr 2018 08:39:05 -0400
parents 62803bb47880
children d7a84a789c83
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8:62803bb47880 9:c886ddb8e122
100 This program makes distance vs. Hi-C counts plots. It can use several matrix files to compare 100 This program makes distance vs. Hi-C counts plots. It can use several matrix files to compare
101 them. If the ``--perchr`` option is given, each chromosome is plotted independently. 101 them. If the ``--perchr`` option is given, each chromosome is plotted independently.
102 Below can be found an example output: 102 Below can be found an example output:
103 103
104 .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts.png 104 .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts.png
105 :width: 65% 105 :scale: 50 %
106 106
107 Here, we see that the samples from the first condition are not so well correlated, but they follow the same tendancies and are distinct from the two samples of the second condition. The later are well correlated and display enriched long-range contacts compared to the first condition samples. 107 Here, we see that the samples from the first condition are not so well correlated, but they follow the same tendancies and are distinct from the two samples of the second condition. The later are well correlated and display enriched long-range contacts compared to the first condition samples.
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108 109
109 On the second graph below, the distance vs. Hi-C contact counts is computed and plotted per chromosome: 110 On the second graph below, the distance vs. Hi-C contact counts is computed and plotted per chromosome:
110 111
111 .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts_result2.png 112 .. image:: $PATH_TO_IMAGES/hicPlotDistVsCounts_result2.png
112 :width: 80% 113 :scale: 50 %
113 114
114 _________________ 115 _________________
115 116
116 | For more information about HiCExplorer please consider our documentation on readthedocs.io_ 117 | For more information about HiCExplorer please consider our documentation on readthedocs.io_
117 118