Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts
diff hicPlotDistVsCounts.xml @ 5:819bd2c44d4a draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 80462804e4fd7deafbcf8e8c5283cc7a98fa7dd5
| author | bgruening |
|---|---|
| date | Sat, 30 Dec 2017 09:29:00 -0500 |
| parents | ed96f2fd7e3f |
| children | 62803bb47880 |
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--- a/hicPlotDistVsCounts.xml Sat Dec 16 16:31:27 2017 -0500 +++ b/hicPlotDistVsCounts.xml Sat Dec 30 09:29:00 2017 -0500 @@ -11,8 +11,8 @@ #set matrices_labels=[] #for $counter, $m, in enumerate($matrices): #set identifier = re.sub('[^\s\w\-]', '_', str($m.element_identifier)) - ln -f -s '${m}' '${identifier}_${counter}.npz.h5' && - #silent $matrices_path.append("'%s_%s.npz.h5'" % ($identifier, $counter)) + ln -f -s '${m}' '${identifier}_${counter}' && + #silent $matrices_path.append("'%s_%s'" % ($identifier, $counter)) #silent $matrices_labels.append("'%s'" % ($identifier)) #end for @@ -33,7 +33,7 @@ ]]> </command> <inputs> - <param argument="--matrices" type="data" format="h5" multiple="True" label="HiC normalized (corrected) matrices"/> + <param argument="--matrices" type="data" format="h5,cool" multiple="True" label="HiC normalized (corrected) matrices"/> <param argument="--skipDiagonal" type="boolean" truevalue="--skipDiagonal" falsevalue="" label="Exclude diagonal counts" /> <param argument="--perchr" type="boolean" truevalue="--perchr" falsevalue="" label="Generate plots per chromosome"