Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts
changeset 6:476afe8a72fc draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
| author | iuc |
|---|---|
| date | Tue, 02 Jan 2018 10:13:34 -0500 |
| parents | 819bd2c44d4a |
| children | ea39c587161f |
| files | macros.xml test-data/raw_qc_report |
| diffstat | 2 files changed, 30 insertions(+), 1 deletions(-) [+] |
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--- a/macros.xml Sat Dec 30 09:29:00 2017 -0500 +++ b/macros.xml Tue Jan 02 10:13:34 2018 -0500 @@ -11,7 +11,7 @@ <xml name="citations"> <citations> - <citation type="doi">10.5281/zenodo.1123667</citation> + <citation type="doi">10.5281/zenodo.1133705</citation> <yield /> </citations> </xml>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/raw_qc_report Tue Jan 02 10:13:34 2018 -0500 @@ -0,0 +1,29 @@ + +File text_matrix.h5 +Pairs considered 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Pairs used 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +One mate low quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 0 (0.00) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 85 (28.33) +self circle 0 (0.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +short range < 20kb 61 (28.37) +long range 130 (60.47) +inward pairs 42 (19.53) +outward pairs 66 (30.70) +left pairs 48 (22.33) +right pairs 35 (16.28)