Mercurial > repos > bgruening > hicexplorer_hicplotmatrix

comparison test-data/hicQuickQC/QC.log @ 19:7babd8a46fe0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
author iuc
date Tue, 16 Mar 2021 15:24:48 +0000
parents 40b33e101621
children b63363075c2e
comparison
equal deleted inserted replaced
18:5308ca68ef3d 19:7babd8a46fe0
1 1
2 File /tmp/tmpp4d6khlj.h5 2 File /tmp/tmp12xmnm2f.h5
3 Sequenced reads 983 3 Sequenced reads 983
4 Min rest. site distance 300 4 Min rest. site distance 300
5 Max library insert size 1000 5 Max library insert size 1000
6 6
7 # count (percentage w.r.t. total sequenced reads) 7 # count (percentage w.r.t. total sequenced reads)
10 One mate unmapped 506 (51.48) 10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32) 11 One mate not unique 13 (1.32)
12 Low mapping quality 164 (16.68) 12 Low mapping quality 164 (16.68)
13 13
14 # count (percentage w.r.t. mappable, unique and high quality pairs) 14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end 0 (0.00) 15 dangling end GATC 1 (0.33)
16 self ligation (removed) 0 (0.00) 16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00) 17 One mate not close to rest site 0 (0.00)
18 same fragment 85 (28.33) 18 same fragment 84 (28.00)
19 self circle 0 (0.00) 19 self circle 33 (11.00)
20 duplicated pairs 0 (0.00) 20 duplicated pairs 0 (0.00)
21 21
22 # count (percentage w.r.t. total valid pairs used) 22 # count (percentage w.r.t. total valid pairs used)
23 inter chromosomal 24 (11.16) 23 inter chromosomal 24 (11.16)
24 Intra short range (< 20kb) 61 (28.37) 24 Intra short range (< 20kb) 61 (28.37)