Mercurial > repos > bgruening > hicexplorer_hicplotmatrix
view test-data/raw_qc_report @ 11:c2521cba1c32 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2307743fd10f0babde52eec30289fe1682236287
author | iuc |
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date | Sat, 09 Jun 2018 15:32:09 -0400 |
parents | d398f5373c70 |
children |
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File matrix.h5 Pairs considered 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Pairs used 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) One mate low quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end 0 (0.00) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 85 (28.33) self circle 0 (0.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) short range < 20kb 61 (28.37) long range 130 (60.47) inward pairs 42 (19.53) outward pairs 66 (30.70) left pairs 48 (22.33) right pairs 35 (16.28)