view test-data/raw_qc_report @ 7:f93a78bc045e draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit a05a78e9ba25279eb27ca6dbad8d8ded1c5f033e
author iuc
date Wed, 21 Feb 2018 11:36:08 -0500
parents 268a01fbf402
children d398f5373c70
line wrap: on
line source


File	text_matrix.h5		
Pairs considered	983		
Min rest. site distance	300		
Max library insert size	1000		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	300	(30.52)
Pairs used	215	(21.87)
One mate unmapped	506	(51.48)
One mate not unique	13	(1.32)
One mate low quality	164	(16.68)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end	0	(0.00)
self ligation (removed)	0	(0.00)
One mate not close to rest site	0	(0.00)
same fragment	85	(28.33)
self circle	0	(0.00)
duplicated pairs	0	(0.00)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	24	(11.16)
short range < 20kb	61	(28.37)
long range	130	(60.47)
inward pairs	42	(19.53)
outward pairs	66	(30.70)
left pairs	48	(22.33)
right pairs	35	(16.28)