Mercurial > repos > bgruening > hicexplorer_hicplotsvl

comparison hicPlotSVL.xml @ 8:b4e780e93c91 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:13:25 +0000
parents 279fb179dae7
children 337705015ee8
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7:279fb179dae7 8:b4e780e93c91
37 37
38 && mv plot.$image_file_format plot 38 && mv plot.$image_file_format plot
39 ]]> 39 ]]>
40 </command> 40 </command>
41 <inputs> 41 <inputs>
42 <expand macro='matrix_h5_cooler_multiple_macro' /> 42 <expand macro="matrix_h5_cooler_multiple_macro" />
43 <param argument="--distance" optional='true' type="integer" label="Short range distance" help="Distance which should be considered as short range. Default 2MB." value='2000000' /> 43 <param argument="--distance" optional="true" type="integer" label="Short range distance" help="Distance which should be considered as short range. Default 2MB." value="2000000" />
44 <expand macro="chromosome_list" /> 44 <expand macro="chromosome_list" />
45 <param argument="--colorList" optional='true' type="text" label="Colorlist" help="Colorlist for the boxplots." /> 45 <param argument="--colorList" optional="true" type="text" label="Colorlist" help="Colorlist for the boxplots." />
46 <expand macro="dpi" /> 46 <expand macro="dpi" />
47 <param name="image_file_format" type="select" label="Image output format"> 47 <param name="image_file_format" type="select" label="Image output format">
48 <option value="png" selected="True">png</option> 48 <option value="png" selected="True">png</option>
49 <option value="svg">svg</option> 49 <option value="svg">svg</option>
50 <option value="pdf">pdf</option> 50 <option value="pdf">pdf</option>
51 </param> 51 </param>
52 </inputs> 52 </inputs>
53 <outputs> 53 <outputs>
54 <data name='output_plot' from_work_dir='plot' format='png' label='Plot SVL'> 54 <data name="output_plot" from_work_dir="plot" format="png" label="Plot SVL">
55 <change_format> 55 <change_format>
56 <when input="image_file_format" value="svg" format="svg" /> 56 <when input="image_file_format" value="svg" format="svg" />
57 <when input="image_file_format" value="pdf" format="pdf" /> 57 <when input="image_file_format" value="pdf" format="pdf" />
58 </change_format> 58 </change_format>
59 </data> 59 </data>
60 <data name='output_p_values' from_work_dir='p_values.txt' format='txt' label='P values svl' /> 60 <data name="output_p_values" from_work_dir="p_values.txt" format="txt" label="P values svl" />
61 <data name='output_ratios' from_work_dir='ratios.txt' format='txt' label='Ratios svl' /> 61 <data name="output_ratios" from_work_dir="ratios.txt" format="txt" label="Ratios svl" />
62 62
63 </outputs> 63 </outputs>
64 <tests> 64 <tests>
65 <test> 65 <test>
66 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" /> 66 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />