Mercurial > repos > bgruening > hicexplorer_hicplotsvl

view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 5:1923cc7e6bc2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3e5c2f8ce3e540b0474746a33ee20b4a374dd38c"
author iuc
date Fri, 11 Dec 2020 21:11:52 +0000
parents 41e1d7a40b3b
children b75f87deaa15
line wrap: on
line source

# Created with chicQualityControl version 3.4.3
# QC report for matrices: 0_matrix.cool 1_matrix.cool 
#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.

Number of reference points: 43
Number of accepted reference points: 35
Number of rejected reference points: 8
Number of faulty reference points: 0


A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
Please check the results of hicInfo to validate this for your data.