Mercurial > repos > bgruening > hicexplorer_hicplotsvl
changeset 2:3a7752b8d2cb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"
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--- a/hicPlotSVL.xml Wed Feb 05 20:03:49 2020 -0500 +++ b/hicPlotSVL.xml Wed Mar 11 17:00:23 2020 -0400 @@ -13,7 +13,7 @@ ln -s '$m' '${counter}_$identifier' && #end for #set $m = ' '.join([ '\'%s_%s\'' % ($counter, @ESCAPE_IDENTIFIER_MATRIX@) for $counter, $matrix in enumerate($matrix_h5_cooler_multiple) ]) - + @BINARY@ --matrices $m #if $distance: @@ -29,10 +29,10 @@ #if $dpi: --dpi $dpi - #end if + #end if --plotFileName plot.$image_file_format --outFileName p_values.txt - --outFileNameData ratios.txt + --outFileNameData ratios.txt --threads @THREADS@ && mv plot.$image_file_format plot @@ -51,7 +51,7 @@ <option value="pdf">pdf</option> </param> </inputs> - <outputs> + <outputs> <data name='output_plot' from_work_dir='plot' format='png' label='Plot SVL'> <change_format> <when input="image_file_format" value="svg" format="svg" /> @@ -83,7 +83,7 @@ <output name="output_plot" file="hicPlotSVL/plot.png" ftype="png" compare="sim_size"/> <output name="output_p_values" file="hicPlotSVL/p_values.txt" ftype="txt" compare="sim_size"/> <output name="output_ratios" file="hicPlotSVL/ratios.txt" ftype="txt" compare="sim_size"/> - + </test> </tests> <help><