Mercurial > repos > bgruening > hicexplorer_hicplottads
comparison test-data/raw_qc_report @ 6:36ef3cb8ae2e draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
author | iuc |
---|---|
date | Tue, 02 Jan 2018 10:20:13 -0500 |
parents | |
children | 94fff1a6a899 |
comparison
equal
deleted
inserted
replaced
5:144bf28956a7 | 6:36ef3cb8ae2e |
---|---|
1 | |
2 File text_matrix.h5 | |
3 Pairs considered 983 | |
4 Min rest. site distance 300 | |
5 Max library insert size 1000 | |
6 | |
7 # count (percentage w.r.t. total sequenced reads) | |
8 Pairs mappable, unique and high quality 300 (30.52) | |
9 Pairs used 215 (21.87) | |
10 One mate unmapped 506 (51.48) | |
11 One mate not unique 13 (1.32) | |
12 One mate low quality 164 (16.68) | |
13 | |
14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
15 dangling end 0 (0.00) | |
16 self ligation (removed) 0 (0.00) | |
17 One mate not close to rest site 0 (0.00) | |
18 same fragment 85 (28.33) | |
19 self circle 0 (0.00) | |
20 duplicated pairs 0 (0.00) | |
21 | |
22 # count (percentage w.r.t. total valid pairs used) | |
23 inter chromosomal 24 (11.16) | |
24 short range < 20kb 61 (28.37) | |
25 long range 130 (60.47) | |
26 inward pairs 42 (19.53) | |
27 outward pairs 66 (30.70) | |
28 left pairs 48 (22.33) | |
29 right pairs 35 (16.28) |