Mercurial > repos > bgruening > hicexplorer_hicplottads
diff hicPlotTADs.xml @ 7:94fff1a6a899 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 0456f085bac2c88b8cbddfcf12b02776d2a0d457
| author | bgruening |
|---|---|
| date | Wed, 07 Mar 2018 03:46:02 -0500 |
| parents | 144bf28956a7 |
| children | 7e535e3b71f3 |
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--- a/hicPlotTADs.xml Tue Jan 02 10:20:13 2018 -0500 +++ b/hicPlotTADs.xml Wed Mar 07 03:46:02 2018 -0500 @@ -48,6 +48,7 @@ max_value = $track.track_file_style_conditional.max_value #end if transform = $track.track_file_style_conditional.transform +width = $track.track_file_style_conditional.width_matrix #if $track.track_file_style_conditional.boundaries_file: boundaries_file = $track.track_file_style_conditional.boundaries_file #end if @@ -76,6 +77,9 @@ #if $track.track_file_style_conditional.width_tad: width = $track.track_file_style_conditional.width_tad #end if +#if $track.track_file_style_conditional.type_lines: +type = $track.track_file_style_conditional.type_lines +#end if #if $track.track_file_style_conditional.show_data: show data range = $track.track_file_style_conditional.show_data #end if @@ -246,7 +250,7 @@ <option value="hic_matrix_option">TAD visualization</option> <option value="chrom_states_option">Chromatine states</option> <option value="tad_score_track_option">TAD score</option> - <option value="gene_track_option">Gene track</option> + <option value="gene_track_option">Gene track / Bed track</option> <option value="bigwig_track_option">Bigwig track</option> <option value="bedgraph_track_option">Bedgraph track </option> <option value="bedgraph_matrix_track_option">Bedgraph matrix track</option> @@ -267,6 +271,8 @@ <option value="-log">-log</option> </param> + <param name="width_matrix" type="float" value="1.5" optional="True" label="Width"/> + <param name="type" type="select" optional="True" label="Plotting type"> <option value="arcplot">arcplot</option> <option value="interaction">interaction</option> @@ -282,7 +288,9 @@ <expand macro="plot_title" /> <expand macro="track_input_bedgraph_macro" /> <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> - + <param name="type_lines" type="boolean" truevalue="lines" falsevalue="" checked="false" + label="Set 'type' to 'lines'" help="if type is set as lines, then the TAD score lines are drawn instead + of the matrix set to lines if a heatmap representing the matrix is not wanted"/> <param name="width_tad" type="float" value="0.2" optional="True" label="Width"/> <param name='show_data' type="boolean" truevalue="yes" falsevalue="no" checked="false" optional="True" label="Show visualization of data range" /> </when>