Mercurial > repos > bgruening > hicexplorer_hicplottads
diff test-data/raw_qc_report @ 11:50171f863420 draft default tip
"planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 91a0182476a7fc26be7bef1677790518c4e88348-dirty"
| author | bgruening |
|---|---|
| date | Mon, 16 Dec 2019 10:35:33 -0500 |
| parents | a67942d17a91 |
| children |
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--- a/test-data/raw_qc_report Sat Jun 09 15:40:12 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ - -File matrix.h5 -Pairs considered 983 -Min rest. site distance 300 -Max library insert size 1000 - -# count (percentage w.r.t. total sequenced reads) -Pairs mappable, unique and high quality 300 (30.52) -Pairs used 215 (21.87) -One mate unmapped 506 (51.48) -One mate not unique 13 (1.32) -One mate low quality 164 (16.68) - -# count (percentage w.r.t. mappable, unique and high quality pairs) -dangling end 0 (0.00) -self ligation (removed) 0 (0.00) -One mate not close to rest site 0 (0.00) -same fragment 85 (28.33) -self circle 0 (0.00) -duplicated pairs 0 (0.00) - -# count (percentage w.r.t. total valid pairs used) -inter chromosomal 24 (11.16) -short range < 20kb 61 (28.37) -long range 130 (60.47) -inward pairs 42 (19.53) -outward pairs 66 (30.70) -left pairs 48 (22.33) -right pairs 35 (16.28)