Mercurial > repos > bgruening > hicexplorer_hicplotviewpoint
diff hicPlotViewpoint.xml @ 15:58de3c7c8e89 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author | iuc |
---|---|
date | Wed, 18 Oct 2023 11:08:32 +0000 |
parents | b637a1e3cb14 |
children | 8d203e74869b |
line wrap: on
line diff
--- a/hicPlotViewpoint.xml Tue Jan 10 18:55:33 2023 +0000 +++ b/hicPlotViewpoint.xml Wed Oct 18 11:08:32 2023 +0000 @@ -18,7 +18,7 @@ #end if --outFileName plot.$image_file_format --region $region - --referencePoint $referencePoint + --referencePoint '$referencePoint' && mv plot.$image_file_format plot #if $interactionOutFileName: @@ -30,7 +30,7 @@ ]]> </command> <inputs> - <expand macro='matrix_h5_cooler_multiple_macro' /> + <expand macro="matrix_h5_cooler_multiple_macro" /> <expand macro="region" /> <param name="referencePoint" type="text" label="Reference point" help="The format is chr:referencePoint or chr:regionStart-regionEnd."> <validator type="expression" message="Only alphanumeric characters, the colon or a dash are allowed.">not value or value.replace(':', '').replace('-', '').isalnum()</validator> @@ -54,19 +54,19 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="1"> <param name="matrix_h5_cooler_multiple" value="Li_et_al_2015.cool" /> <param name="image_file_format" value="png" /> - <param name='region' value='X:3000000-3500000' /> - <param name='referencePoint' value='X:3200000' /> + <param name="region" value="X:3000000-3500000" /> + <param name="referencePoint" value="X:3200000" /> <output name="outFileName" file="li_viewpoint_32Mb.png" ftype="png" compare="sim_size" /> </test> - <test> + <test expect_num_outputs="2"> <param name="matrix_h5_cooler_multiple" value="Li_et_al_2015.cool" /> <param name="image_file_format" value="png" /> - <param name='region' value='X:3000000-3500000' /> - <param name='referencePoint' value='X:3200000-3300000' /> - <param name='interactionOutFileName' value='True' /> + <param name="region" value="X:3000000-3500000" /> + <param name="referencePoint" value="X:3200000-3300000" /> + <param name="interactionOutFileName" value="True" /> <output name="outFileName" file="li_viewpoint_32-33Mb.png" ftype="png" compare="sim_size" /> <output name="interactionFile"> <discovered_dataset designation="0_interactions" file="li_32-33mb_interactions.bedgraph" />