Mercurial > repos > bgruening > hicexplorer_hicquickqc
diff hicQuickQC.xml @ 8:21d859ad4502 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 10:11:51 +0000 |
| parents | 9c5078f3926b |
| children | ea8fb5e899e8 |
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--- a/hicQuickQC.xml Tue Jan 10 18:47:20 2023 +0000 +++ b/hicQuickQC.xml Wed Oct 18 10:11:51 2023 +0000 @@ -41,13 +41,11 @@ <expand macro="restrictionCutFile" /> <expand macro="restrictionSequence" /> <expand macro="danglingSequence" /> - - <param argument="--lines" optional='true' type="integer" label="Lines to analyze for the QC report" help= "Number of lines to consider for the qc test run." value='1000000' /> - + <param argument="--lines" optional="true" type="integer" label="Lines to analyze for the QC report" help= "Number of lines to consider for the qc test run." value="1000000" /> </inputs> <outputs> <data name="qc" format="html" label="${tool.name} QC on ${on_string}" /> - <data name="raw_qc" from_work_dir='raw_qc' format='txt' label="${tool.name} raw QC on ${on_string}" /> + <data name="raw_qc" from_work_dir="raw_qc" format="txt" label="${tool.name} raw QC on ${on_string}" /> </outputs> <tests> <test expect_num_outputs="2"> @@ -57,12 +55,11 @@ <repeat name="samFiles"> <param name="samFile" value="small_test_R2_unsorted.sam" /> </repeat> - <param name='restrictionCutFile' value='DpnII_10k.bed' /> - <param name='restrictionSequence' value='GATC' /> - <param name='danglingSequence' value='GATC' /> - - <param name="lines" value='1000' /> - <output name="raw_qc" file='hicQuickQC/QC.log' compare='diff' lines_diff='2' /> + <param name="restrictionCutFile" value="DpnII_10k.bed" /> + <param name="restrictionSequence" value="GATC" /> + <param name="danglingSequence" value="GATC" /> + <param name="lines" value="1000" /> + <output name="raw_qc" file="hicQuickQC/QC.log" compare="diff" lines_diff="2" /> </test> </tests> <help><![CDATA[