Mercurial > repos > bgruening > hicexplorer_hicsummatrices

annotate test-data/raw_qc_report @ 11:6d1526527417 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 2307743fd10f0babde52eec30289fe1682236287
author iuc
date Sat, 09 Jun 2018 15:39:00 -0400
parents c109622e0cf5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
1
8
c109622e0cf5 planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 0456f085bac2c88b8cbddfcf12b02776d2a0d457
iuc
parents: 6
diff changeset
2 File matrix.h5
6
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
3 Pairs considered 983
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
4 Min rest. site distance 300
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
5 Max library insert size 1000
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
6
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
7 # count (percentage w.r.t. total sequenced reads)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
8 Pairs mappable, unique and high quality 300 (30.52)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
9 Pairs used 215 (21.87)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
10 One mate unmapped 506 (51.48)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
11 One mate not unique 13 (1.32)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
12 One mate low quality 164 (16.68)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
13
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
15 dangling end 0 (0.00)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
16 self ligation (removed) 0 (0.00)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
17 One mate not close to rest site 0 (0.00)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
18 same fragment 85 (28.33)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
19 self circle 0 (0.00)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
20 duplicated pairs 0 (0.00)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
21
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
22 # count (percentage w.r.t. total valid pairs used)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
23 inter chromosomal 24 (11.16)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
24 short range < 20kb 61 (28.37)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
25 long range 130 (60.47)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
26 inward pairs 42 (19.53)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
27 outward pairs 66 (30.70)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
28 left pairs 48 (22.33)
34da5ed2507c planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
29 right pairs 35 (16.28)