Mercurial > repos > bgruening > hicexplorer_hicsummatrices
comparison test-data/raw_qc_report @ 6:34da5ed2507c draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
| author | iuc |
|---|---|
| date | Tue, 02 Jan 2018 10:18:36 -0500 |
| parents | |
| children | c109622e0cf5 |
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| 5:b9f41afc3312 | 6:34da5ed2507c |
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| 1 | |
| 2 File text_matrix.h5 | |
| 3 Pairs considered 983 | |
| 4 Min rest. site distance 300 | |
| 5 Max library insert size 1000 | |
| 6 | |
| 7 # count (percentage w.r.t. total sequenced reads) | |
| 8 Pairs mappable, unique and high quality 300 (30.52) | |
| 9 Pairs used 215 (21.87) | |
| 10 One mate unmapped 506 (51.48) | |
| 11 One mate not unique 13 (1.32) | |
| 12 One mate low quality 164 (16.68) | |
| 13 | |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
| 15 dangling end 0 (0.00) | |
| 16 self ligation (removed) 0 (0.00) | |
| 17 One mate not close to rest site 0 (0.00) | |
| 18 same fragment 85 (28.33) | |
| 19 self circle 0 (0.00) | |
| 20 duplicated pairs 0 (0.00) | |
| 21 | |
| 22 # count (percentage w.r.t. total valid pairs used) | |
| 23 inter chromosomal 24 (11.16) | |
| 24 short range < 20kb 61 (28.37) | |
| 25 long range 130 (60.47) | |
| 26 inward pairs 42 (19.53) | |
| 27 outward pairs 66 (30.70) | |
| 28 left pairs 48 (22.33) | |
| 29 right pairs 35 (16.28) |