Mercurial > repos > bgruening > hicexplorer_hicsummatrices

comparison hicSumMatrices.xml @ 21:36dfa2825a59 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:15:10 +0000
parents 5aa5ef83f975
children 1d6af10874d5
comparison
equal deleted inserted replaced
20:2a57fc28ef3a 21:36dfa2825a59
18 18
19 && mv 'matrix.$extension' matrix 19 && mv 'matrix.$extension' matrix
20 ]]> 20 ]]>
21 </command> 21 </command>
22 <inputs> 22 <inputs>
23 <expand macro='matrix_h5_cooler_multiple_macro' /> 23 <expand macro="matrix_h5_cooler_multiple_macro" />
24 </inputs> 24 </inputs>
25 <outputs> 25 <outputs>
26 <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' /> 26 <data name="outFileName" from_work_dir="matrix" format_source="matrix_h5_cooler_multiple" />
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test> 29 <test>
30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" /> 30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
31 <output name="outFileName" ftype="h5"> 31 <output name="outFileName" ftype="h5">
32 <assert_contents> 32 <assert_contents>
33 <has_h5_keys keys='intervals,matrix' /> 33 <has_h5_keys keys="intervals,matrix" />
34 </assert_contents> 34 </assert_contents>
35 </output> 35 </output>
36 </test> 36 </test>
37 <test> 37 <test>
38 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" /> 38 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
39 <output name="outFileName" ftype="cool"> 39 <output name="outFileName" ftype="cool">
40 <assert_contents> 40 <assert_contents>
41 <has_h5_keys keys='bins,chroms,indexes,pixels' /> 41 <has_h5_keys keys="bins,chroms,indexes,pixels" />
42 </assert_contents> 42 </assert_contents>
43 </output> 43 </output>
44 </test> 44 </test>
45 </tests> 45 </tests>
46 <help><![CDATA[ 46 <help><![CDATA[