Mercurial > repos > bgruening > hicexplorer_hicsummatrices

diff hicSumMatrices.xml @ 2:2bbe234ca6ce draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251
author bgruening
date Thu, 02 Nov 2017 11:13:21 -0400
parents c4ee66c35eb6
children d387dacb6867
line wrap: on
line diff
--- a/hicSumMatrices.xml	Mon Apr 03 07:27:50 2017 -0400
+++ b/hicSumMatrices.xml	Thu Nov 02 11:13:21 2017 -0400
@@ -5,24 +5,21 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
-    <command>
-<![CDATA[
+    <command detect_errors="exit_code"><![CDATA[
+
         #for $counter, $m in enumerate($matrices):
             ln -s '$m' ${counter}.npz.h5 &&
         #end for
 
-       #set $m = '" "'.join([ '%s.npz.h5' % $counter for $counter, $matrix in enumerate($matrices) ])
+        #set $m = '" "'.join([ '%s.npz.h5' % $counter for $counter, $matrix in enumerate($matrices) ])
         hicSumMatrices
             --matrices "$m"
             --outFileName ./out.npz.h5
-
 ]]>
     </command>
     <inputs>
-
         <param argument="--matrices" type="data" format="h5" multiple="True"
             label="Matrices to combine" help="Needs to have the same shape"/>
-
     </inputs>
     <outputs>
         <data name="outFileName" from_work_dir="out.npz.h5" format="h5"/>