Mercurial > repos > bgruening > hicexplorer_hicsummatrices
view test-data/raw_qc_report @ 7:e0df60f3b0d5 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit d76f2040a05a5f8752cbfe9a8bc1ef9efae45c01
author | iuc |
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date | Wed, 03 Jan 2018 13:31:47 -0500 |
parents | 34da5ed2507c |
children | c109622e0cf5 |
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File text_matrix.h5 Pairs considered 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Pairs used 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) One mate low quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end 0 (0.00) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 85 (28.33) self circle 0 (0.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) short range < 20kb 61 (28.37) long range 130 (60.47) inward pairs 42 (19.53) outward pairs 66 (30.70) left pairs 48 (22.33) right pairs 35 (16.28)