Mercurial > repos > bgruening > hicup_deduplicator

comparison test-data/dataset.filt.sam @ 0:d515a0639f8e draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
author bgruening
date Thu, 09 Mar 2017 09:30:33 -0500
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-1:000000000000 0:d515a0639f8e
1 @HD VN:1.0 SO:unsorted
2 @SQ SN:chr1 LN:199950
3 @PG ID:bowtie2 PN:bowtie2 VN:2.3.0 CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
4 @PG ID:HiCUP Mapper VN:0.5.9
5 @PG ID:HiCUP Truncater VN:0.5.9 DS:"Restriction enzyme --re1 A^AGCTT"
6 @PG ID:HiCUP Filter VN:0.5.9 DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"
7 SRR071233.43293 83 chr1 35433 3 40M = 75323 0 GAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATAGTGAG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:-15 XN:i:0 XM:i:3 XO:i:0 XG:i:0 NM:i:3 MD:Z:3G22A1C11 YT:Z:UU CT:Z:FAR
8 SRR071233.43293 163 chr1 75323 23 40M = 35433 0 CTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCG CCBCCCCCCBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AS:i:-10 XN:i:0 XM:i:2 XO:i:0 XG:i:0 NM:i:2 MD:Z:20A18A0 YT:Z:UU CT:Z:FAR