Mercurial > repos > bgruening > hicup_digester

comparison hicup_macros.xml @ 1:e2767f2e41fd draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b4d9ad47b45abb117a059214e1f7b29d084b4ca3
author bgruening
date Sat, 19 Aug 2017 07:39:06 -0400
parents a47a96d2721a
children f220157fbd22
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0:a47a96d2721a 1:e2767f2e41fd
73 </xml> 73 </xml>
74 <xml name="re2"> 74 <xml name="re2">
75 <param argument="--re2" type="text" value="" label="Restriction enzyme instead of sonication to shorten di-tags." help="To specify a restriction enzyme instead of sonication to shorten di-tags. This restriction site does NOT form a Hi-C ligation junction. 2 .g. AG^CT,AluI. Typically the sonication protocol is followed."/> 75 <param argument="--re2" type="text" value="" label="Restriction enzyme instead of sonication to shorten di-tags." help="To specify a restriction enzyme instead of sonication to shorten di-tags. This restriction site does NOT form a Hi-C ligation junction. 2 .g. AG^CT,AluI. Typically the sonication protocol is followed."/>
76 </xml> 76 </xml>
77 <xml name="digester_input"> 77 <xml name="digester_input">
78 <param name="input_files_digest" type="data" multiple="true" format="fa" label="Input DNA sequence files that should be digested"/> 78 <param name="input_files_digest" type="data" multiple="true" format="fasta" label="Input DNA sequence files that should be digested"/>
79 <param argument="--genome" type="text" label="Genome" help="Name of the genome to be digested (not the path to the genome 79 <param argument="--genome" type="text" label="Genome" help="Name of the genome to be digested (not the path to the genome
80 file or files, but the genome name to include in the output file)"/> 80 file or files, but the genome name to include in the output file)"/>
81 </xml> 81 </xml>
82 <xml name="filter_longest_shortest"> 82 <xml name="filter_longest_shortest">
83 <param argument="--longest" type="text" value="" label="Max insert size" help="Maximum allowable insert size (bps)"/> 83 <param argument="--longest" type="text" value="" label="Max insert size" help="Maximum allowable insert size (bps)"/>