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view test-data/HiCUP_summary_report.txt @ 6:8b1d0e4e8f22 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hicup commit 50173a1994a72d9774fd46777de94dd02d35bd42
author bgruening
date Mon, 24 Oct 2022 16:15:04 +0000
parents 2edfb71706b3
children
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File	Total_Reads_1	Total_Reads_2	Not_Truncated_Reads_1	Not_Truncated_Reads_2	Truncated_Read_1	Truncated_Read_2	Average_Length_Truncated_1	Average_Length_Truncated_2	Too_Short_To_Map_Read_1	Too_Short_To_Map_Read_2	Unique_Alignments_Read_1	Unique_Alignments_Read_2	Multiple_Alignments_Read_1	Multiple_Alignments_Read_2	Failed_To_Align_Read_1	Failed_To_Align_Read_2	Paired_Read_1	Paired_Read_2	Valid_Pairs	Valid_Cis_Close	Valid_Cis_Far	Valid_Trans	Invalid_Pairs	Same_Circularised	Same_Dangling_Ends	Same_Fragment_Internal	Re_Ligation	Contiguous_Sequence	Wrong_Size	Deduplication_Read_Pairs_Uniques	Deduplication_Cis_Close_Uniques	Deduplication_Cis_Far_Uniques	Deduplication_Trans_Uniques	Percentage_Mapped	Percentage_Valid	Percentage_Uniques	Percentage_Unique_Trans	Percentage_Ditags_Passed_Through_HiCUP
dataset1_2.hicup.bam	99742	99742	92512	92628	7230	7114	22.45	22.63	2658	2476	3885	3725	12437	12679	80762	80862	1143	1143	544	44	440	60	599	21	73	466	39	0	0	544	44	440	60	1.15	47.59	100.00	11.03	0.55