Mercurial > repos > bgruening > hicup_filter

comparison hicup_filter.xml @ 3:b16228ec1540 draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit e6a9507eb198c6bf2c63ddae387c262bfc8dbd16
author bgruening
date Thu, 09 Nov 2017 11:16:04 -0500
parents cfa9c047cda4
children a7bbbf32da62
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2:cfa9c047cda4 3:b16228ec1540
1 <tool id="hicup_filter" name="Hicup Filter" version="@VERSION@.0"> 1 <tool id="hicup_filter" name="Hicup Filter" version="@VERSION@.0">
2 <description>classifies read pairs, identifying valid Hi-C di-tags.</description> 2 <description>classifies read pairs, identifying valid Hi-C di-tags.</description>
3
4 <macros> 3 <macros>
5 <import>hicup_macros.xml</import> 4 <import>hicup_macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="requirements_hicup" /> 6 <expand macro="requirements_hicup" />
8 <expand macro="stdio" /> 7 <expand macro="stdio" />
9
10 <command><![CDATA[ 8 <command><![CDATA[
11 hicup_filter --digest '$digest' 9 hicup_filter --digest '$digest'
12 #if $advanced_options.longest: 10 #if $advanced_options.longest:
13 --longest '$advanced_options.longest' 11 --longest '$advanced_options.longest'
14 #end if 12 #end if