Mercurial > repos > bgruening > hicup_mapper

view test-data/dataset.hicup.sam @ 0:9ba09ebeb5aa draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
author bgruening
date Thu, 09 Mar 2017 09:32:26 -0500
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@HD	VN:1.0	SO:unsorted
@SQ	SN:chr1	LN:199950
@PG	ID:bowtie2	PN:bowtie2	VN:2.3.0	CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
@PG	ID:HiCUP Mapper	VN:0.5.9
@PG	ID:HiCUP Truncater	VN:0.5.9	DS:"Restriction enzyme --re1 A^AGCTT"
@PG	ID:HiCUP Filter	VN:0.5.9	DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"
@PG	HiCUP Deduplicator	VN:0.5.9
SRR071233.43293	83	chr1	35433	3	40M	=	75323	0	GAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATAGTGAG	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	AS:i:-15	XN:i:0	XM:i:3	XO:i:0	XG:i:0	NM:i:3	MD:Z:3G22A1C11	YT:Z:UU	CT:Z:FAR
SRR071233.43293	163	chr1	75323	23	40M	=	35433	0	CTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCG	CCBCCCCCCBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	AS:i:-10	XN:i:0	XM:i:2	XO:i:0	XG:i:0	NM:i:2	MD:Z:20A18A0	YT:Z:UU	CT:Z:FAR