Mercurial > repos > bgruening > hifiasm
comparison hifiasm.xml @ 18:df25d4fb79b7 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm commit 59abcbabcdbfb8b5bdb0abcd5d3f24fee19abd6f
author | bgruening |
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date | Wed, 17 Jan 2024 21:31:58 +0000 |
parents | 0ee0c3089254 |
children | 284a1cb82b61 |
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17:0ee0c3089254 | 18:df25d4fb79b7 |
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1 <tool id="hifiasm" name="Hifiasm" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> | 1 <tool id="hifiasm" name="Hifiasm" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> |
2 <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description> | 2 <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description> |
3 <macros> | 3 <macros> |
4 <token name="@TOOL_VERSION@">0.19.8</token> | 4 <token name="@TOOL_VERSION@">0.19.8</token> |
5 <token name="@VERSION_SUFFIX@">0</token> | 5 <token name="@VERSION_SUFFIX@">1</token> |
6 <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token> | 6 <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token> |
7 <xml name="reads"> | 7 <xml name="reads"> |
8 <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" /> | 8 <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" /> |
9 </xml> | 9 </xml> |
10 </macros> | 10 </macros> |
268 <option value="blank">Leave default</option> | 268 <option value="blank">Leave default</option> |
269 <option value="set">Specify</option> | 269 <option value="set">Specify</option> |
270 </param> | 270 </param> |
271 <when value="blank" /> | 271 <when value="blank" /> |
272 <when value="set"> | 272 <when value="set"> |
273 <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>10kb) reads" /> | 273 <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>100kb) reads" /> |
274 <param argument="--ul-rate" type="float" value="0.2" optional="true" label="error rate of ultra-long reads (default 0.2)" /> | 274 <param argument="--ul-rate" type="float" value="0.2" optional="true" label="error rate of ultra-long reads (default 0.2)" /> |
275 <param argument="--ul-tip" type="integer" value="6" optional="true" label="remove tip unitigs composed of less than (INT) reads for the UL assembly (default 6)" /> | 275 <param argument="--ul-tip" type="integer" value="6" optional="true" label="remove tip unitigs composed of less than (INT) reads for the UL assembly (default 6)" /> |
276 </when> | 276 </when> |
277 </conditional> | 277 </conditional> |
278 <conditional name="advanced_options"> | 278 <conditional name="advanced_options"> |