diff test-data/annotation.exp.bed @ 0:94a987a7da69 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/htseq-clip commit 4879439f0df3386b97d8507c5991051fbdda053a
author bgruening
date Tue, 11 Oct 2022 16:09:23 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotation.exp.bed	Tue Oct 11 16:09:23 2022 +0000
@@ -0,0 +1,134 @@
+Synechocystis_pSYSM	127	981	TU5001@TU5001@protein_coding@exon@1/1@TU5001:exon0001	2	-
+Synechocystis_pSYSM	1010	1130	TU5002@TU5002@protein_coding@exon@1/1@TU5002:exon0001	2	-
+Synechocystis_pSYSM	1130	1846	TU5003@TU5003@protein_coding@exon@1/1@TU5003:exon0001	2	-
+Synechocystis_pSYSM	2427	5630	TU5005@TU5005@protein_coding@exon@1/1@TU5005:exon0001	2	+
+Synechocystis_pSYSM	2006	2443	TU5004@TU5004@protein_coding@exon@1/1@TU5004:exon0001	2	-
+Synechocystis_pSYSM	2443	2620	TU5006@TU5006@protein_coding@exon@1/1@TU5006:exon0001	2	-
+Synechocystis_pSYSM	3318	4067	TU5007@TU5007@protein_coding@exon@1/1@TU5007:exon0001	2	-
+Synechocystis_pSYSM	4094	4248	TU5008@TU5008@protein_coding@exon@1/1@TU5008:exon0001	2	-
+Synechocystis_pSYSM	4420	4672	TU5009@TU5009@protein_coding@exon@1/1@TU5009:exon0001	2	-
+Synechocystis_pSYSM	6429	7154	TU5011@TU5011@protein_coding@exon@1/1@TU5011:exon0001	2	+
+Synechocystis_pSYSM	5615	6539	TU5010@TU5010@protein_coding@exon@1/1@TU5010:exon0001	2	-
+Synechocystis_pSYSM	7347	9684	TU5012@TU5012@protein_coding@exon@1/1@TU5012:exon0001	2	+
+Synechocystis_pSYSM	9189	9574	TU5013@TU5013@protein_coding@exon@1/1@TU5013:exon0001	2	-
+Synechocystis_pSYSM	9630	9761	TU5014@TU5014@protein_coding@exon@1/1@TU5014:exon0001	2	-
+Synechocystis_pSYSM	10853	11028	TU5015@TU5015@protein_coding@exon@1/1@TU5015:exon0001	2	-
+Synechocystis_pSYSM	11695	12006	TU5017@TU5017@protein_coding@exon@1/1@TU5017:exon0001	2	+
+Synechocystis_pSYSM	11629	11759	TU5016@TU5016@protein_coding@exon@1/1@TU5016:exon0001	2	-
+Synechocystis_pSYSM	11854	12208	TU5018@TU5018@protein_coding@exon@1/1@TU5018:exon0001	2	-
+Synechocystis_pSYSM	12787	14355	TU5019@TU5019@protein_coding@exon@1/1@TU5019:exon0001	2	+
+Synechocystis_pSYSM	13696	13986	TU5020@TU5020@protein_coding@exon@1/1@TU5020:exon0001	2	-
+Synechocystis_pSYSM	14157	15175	TU5021@TU5021@protein_coding@exon@1/1@TU5021:exon0001	2	-
+Synechocystis_pSYSM	16567	17210	TU5022@TU5022@protein_coding@exon@1/1@TU5022:exon0001	2	+
+Synechocystis_pSYSM	21842	22599	TU5023@TU5023@protein_coding@exon@1/1@TU5023:exon0001	2	+
+Synechocystis_pSYSM	23221	23711	TU5024@TU5024@protein_coding@exon@1/1@TU5024:exon0001	2	+
+Synechocystis_pSYSM	24161	25003	TU5025@TU5025@protein_coding@exon@1/1@TU5025:exon0001	2	+
+Synechocystis_pSYSM	27608	28079	TU5026@TU5026@protein_coding@exon@1/1@TU5026:exon0001	2	-
+Synechocystis_pSYSM	28100	28454	TU5027@TU5027@protein_coding@exon@1/1@TU5027:exon0001	2	+
+Synechocystis_pSYSM	28516	29127	TU5028@TU5028@protein_coding@exon@1/1@TU5028:exon0001	2	+
+Synechocystis_pSYSM	29531	29852	TU5029@TU5029@protein_coding@exon@1/1@TU5029:exon0001	2	-
+Synechocystis_pSYSM	30391	30577	TU5030@TU5030@protein_coding@exon@1/1@TU5030:exon0001	2	+
+Synechocystis_pSYSM	30577	30894	TU5032@TU5032@protein_coding@exon@1/1@TU5032:exon0001	2	+
+Synechocystis_pSYSM	30441	31230	TU5031@TU5031@protein_coding@exon@1/1@TU5031:exon0001	2	-
+Synechocystis_pSYSM	31370	32542	TU5034@TU5034@protein_coding@exon@1/1@TU5034:exon0001	2	+
+Synechocystis_pSYSM	31363	31493	TU5033@TU5033@protein_coding@exon@1/1@TU5033:exon0001	2	-
+Synechocystis_pSYSM	32049	32287	TU5035@TU5035@protein_coding@exon@1/1@TU5035:exon0001	2	-
+Synechocystis_pSYSM	32867	36416	TU5036@TU5036@protein_coding@exon@1/1@TU5036:exon0001	2	-
+Synechocystis_pSYSM	36427	37215	TU5037@TU5037@protein_coding@exon@1/1@TU5037:exon0001	2	+
+Synechocystis_pSYSM	36619	37100	TU5038@TU5038@protein_coding@exon@1/1@TU5038:exon0001	2	-
+Synechocystis_pSYSM	38076	38146	TU5039@TU5039@protein_coding@exon@1/1@TU5039:exon0001	2	+
+Synechocystis_pSYSM	38146	38341	TU5040@TU5040@protein_coding@exon@1/1@TU5040:exon0001	2	+
+Synechocystis_pSYSM	38860	39180	TU5042@TU5042@protein_coding@exon@1/1@TU5042:exon0001	2	+
+Synechocystis_pSYSM	38228	38863	TU5041@TU5041@protein_coding@exon@1/1@TU5041:exon0001	2	-
+Synechocystis_pSYSM	38872	39093	TU5043@TU5043@protein_coding@exon@1/1@TU5043:exon0001	2	-
+Synechocystis_pSYSM	39280	39536	TU5044@TU5044@protein_coding@exon@1/1@TU5044:exon0001	2	+
+Synechocystis_pSYSM	39356	39595	TU5045@TU5045@protein_coding@exon@1/1@TU5045:exon0001	2	-
+Synechocystis_pSYSM	39868	40320	TU5046@TU5046@protein_coding@exon@1/1@TU5046:exon0001	2	-
+Synechocystis_pSYSM	40367	40737	TU5048@TU5048@protein_coding@exon@1/1@TU5048:exon0001	2	+
+Synechocystis_pSYSM	40880	40980	TU5049@TU5049@protein_coding@exon@1/1@TU5049:exon0001	2	+
+Synechocystis_pSYSM	41279	41555	TU5050@TU5050@protein_coding@exon@1/1@TU5050:exon0001	2	+
+Synechocystis_pSYSM	40320	41347	TU5047@TU5047@protein_coding@exon@1/1@TU5047:exon0001	2	-
+Synechocystis_pSYSM	41347	44333	TU5051@TU5051@protein_coding@exon@1/1@TU5051:exon0001	2	-
+Synechocystis_pSYSM	44825	44893	TU5052@TU5052@protein_coding@exon@1/1@TU5052:exon0001	2	+
+Synechocystis_pSYSM	45654	45917	TU5053@TU5053@protein_coding@exon@1/1@TU5053:exon0001	2	-
+Synechocystis_pSYSM	47305	47471	TU5055@TU5055@protein_coding@exon@1/1@TU5055:exon0001	2	+
+Synechocystis_pSYSM	46079	47421	TU5054@TU5054@protein_coding@exon@1/1@TU5054:exon0001	2	-
+Synechocystis_pSYSM	47990	48760	TU5056@TU5056@protein_coding@exon@1/1@TU5056:exon0001	2	-
+Synechocystis_pSYSM	49644	50551	TU5057@TU5057@protein_coding@exon@1/1@TU5057:exon0001	2	+
+Synechocystis_pSYSM	51068	51411	TU5059@TU5059@protein_coding@exon@1/1@TU5059:exon0001	2	+
+Synechocystis_pSYSM	50533	52415	TU5058@TU5058@protein_coding@exon@1/1@TU5058:exon0001	2	-
+Synechocystis_pSYSM	52509	54090	TU5060@TU5060@protein_coding@exon@1/1@TU5060:exon0001	2	+
+Synechocystis_pSYSM	52871	53329	TU5061@TU5061@protein_coding@exon@1/1@TU5061:exon0001	2	-
+Synechocystis_pSYSM	54090	56341	TU5062@TU5062@protein_coding@exon@1/1@TU5062:exon0001	2	+
+Synechocystis_pSYSM	54442	54547	TU5063@TU5063@protein_coding@exon@1/1@TU5063:exon0001	2	-
+Synechocystis_pSYSM	56341	56696	TU5065@TU5065@protein_coding@exon@1/1@TU5065:exon0001	2	+
+Synechocystis_pSYSM	56075	57877	TU5064@TU5064@protein_coding@exon@1/1@TU5064:exon0001	2	-
+Synechocystis_pSYSM	57971	58098	TU5067@TU5067@protein_coding@exon@1/1@TU5067:exon0001	2	+
+Synechocystis_pSYSM	58176	60093	TU5068@TU5068@protein_coding@exon@1/1@TU5068:exon0001	2	+
+Synechocystis_pSYSM	57877	58254	TU5066@TU5066@protein_coding@exon@1/1@TU5066:exon0001	2	-
+Synechocystis_pSYSM	60448	60548	TU5070@TU5070@protein_coding@exon@1/1@TU5070:exon0001	2	+
+Synechocystis_pSYSM	60230	61467	TU5069@TU5069@protein_coding@exon@1/1@TU5069:exon0001	2	-
+Synechocystis_pSYSM	62255	62633	TU5071@TU5071@protein_coding@exon@1/1@TU5071:exon0001	2	+
+Synechocystis_pSYSM	62948	63048	TU5072@TU5072@protein_coding@exon@1/1@TU5072:exon0001	2	+
+Synechocystis_pSYSM	65044	65105	TU5074@TU5074@protein_coding@exon@1/1@TU5074:exon0001	2	+
+Synechocystis_pSYSM	65105	65478	TU5075@TU5075@protein_coding@exon@1/1@TU5075:exon0001	2	+
+Synechocystis_pSYSM	64727	65354	TU5073@TU5073@protein_coding@exon@1/1@TU5073:exon0001	2	-
+Synechocystis_pSYSM	65431	65758	TU5076@TU5076@protein_coding@exon@1/1@TU5076:exon0001	2	-
+Synechocystis_pSYSM	66499	66570	TU5078@TU5078@protein_coding@exon@1/1@TU5078:exon0001	2	+
+Synechocystis_pSYSM	66134	66741	TU5077@TU5077@protein_coding@exon@1/1@TU5077:exon0001	2	-
+Synechocystis_pSYSM	66759	67178	TU5080@TU5080@protein_coding@exon@1/1@TU5080:exon0001	2	+
+Synechocystis_pSYSM	66741	66889	TU5079@TU5079@protein_coding@exon@1/1@TU5079:exon0001	2	-
+Synechocystis_pSYSM	68943	69294	TU5081@TU5081@protein_coding@exon@1/1@TU5081:exon0001	2	+
+Synechocystis_pSYSM	70808	70930	TU5083@TU5083@protein_coding@exon@1/1@TU5083:exon0001	2	+
+Synechocystis_pSYSM	71035	71172	TU5084@TU5084@protein_coding@exon@1/1@TU5084:exon0001	2	+
+Synechocystis_pSYSM	71179	71410	TU5085@TU5085@protein_coding@exon@1/1@TU5085:exon0001	2	+
+Synechocystis_pSYSM	71410	72343	TU5086@TU5086@protein_coding@exon@1/1@TU5086:exon0001	2	+
+Synechocystis_pSYSM	70188	71421	TU5082@TU5082@protein_coding@exon@1/1@TU5082:exon0001	2	-
+Synechocystis_pSYSM	72372	73651	TU5087@TU5087@protein_coding@exon@1/1@TU5087:exon0001	2	+
+Synechocystis_pSYSM	73521	74252	TU5088@TU5088@protein_coding@exon@1/1@TU5088:exon0001	2	-
+Synechocystis_pSYSM	75606	76019	TU5090@TU5090@protein_coding@exon@1/1@TU5090:exon0001	2	+
+Synechocystis_pSYSM	74894	76000	TU5089@TU5089@protein_coding@exon@1/1@TU5089:exon0001	2	-
+Synechocystis_pSYSM	76019	76462	TU5091@TU5091@protein_coding@exon@1/1@TU5091:exon0001	2	+
+Synechocystis_pSYSM	77225	78996	TU5092@TU5092@protein_coding@exon@1/1@TU5092:exon0001	2	-
+Synechocystis_pSYSM	79011	79343	TU5093@TU5093@protein_coding@exon@1/1@TU5093:exon0001	2	+
+Synechocystis_pSYSM	80782	81194	TU5094@TU5094@protein_coding@exon@1/1@TU5094:exon0001	2	+
+Synechocystis_pSYSM	81242	81856	TU5095@TU5095@protein_coding@exon@1/1@TU5095:exon0001	2	+
+Synechocystis_pSYSM	84294	84407	TU5097@TU5097@protein_coding@exon@1/1@TU5097:exon0001	2	+
+Synechocystis_pSYSM	82175	84296	TU5096@TU5096@protein_coding@exon@1/1@TU5096:exon0001	2	-
+Synechocystis_pSYSM	84344	84569	TU5098@TU5098@protein_coding@exon@1/1@TU5098:exon0001	2	-
+Synechocystis_pSYSM	85143	85245	TU5099@TU5099@protein_coding@exon@1/1@TU5099:exon0001	2	+
+Synechocystis_pSYSM	86227	86581	TU5100@TU5100@protein_coding@exon@1/1@TU5100:exon0001	2	+
+Synechocystis_pSYSM	93438	93540	TU5101@TU5101@protein_coding@exon@1/1@TU5101:exon0001	2	-
+Synechocystis_pSYSM	93555	95162	TU5102@TU5102@protein_coding@exon@1/1@TU5102:exon0001	2	-
+Synechocystis_pSYSM	95266	95366	TU5103@TU5103@protein_coding@exon@1/1@TU5103:exon0001	2	-
+Synechocystis_pSYSM	96109	96722	TU5104@TU5104@protein_coding@exon@1/1@TU5104:exon0001	2	+
+Synechocystis_pSYSM	96787	96968	TU5105@TU5105@protein_coding@exon@1/1@TU5105:exon0001	2	+
+Synechocystis_pSYSM	97638	97814	TU5106@TU5106@protein_coding@exon@1/1@TU5106:exon0001	2	-
+Synechocystis_pSYSM	97880	98246	TU5107@TU5107@protein_coding@exon@1/1@TU5107:exon0001	2	-
+Synechocystis_pSYSM	98453	98555	TU5108@TU5108@protein_coding@exon@1/1@TU5108:exon0001	2	-
+Synechocystis_pSYSM	99737	99823	TU5109@TU5109@protein_coding@exon@1/1@TU5109:exon0001	2	+
+Synechocystis_pSYSM	100402	100505	TU5110@TU5110@protein_coding@exon@1/1@TU5110:exon0001	2	+
+Synechocystis_pSYSM	101953	102280	TU5111@TU5111@protein_coding@exon@1/1@TU5111:exon0001	2	-
+Synechocystis_pSYSM	102286	102636	TU5112@TU5112@protein_coding@exon@1/1@TU5112:exon0001	2	+
+Synechocystis_pSYSM	102320	102539	TU5113@TU5113@protein_coding@exon@1/1@TU5113:exon0001	2	-
+Synechocystis_pSYSM	102687	103185	TU5115@TU5115@protein_coding@exon@1/1@TU5115:exon0001	2	+
+Synechocystis_pSYSM	102539	102781	TU5114@TU5114@protein_coding@exon@1/1@TU5114:exon0001	2	-
+Synechocystis_pSYSM	103185	103584	TU5116@TU5116@protein_coding@exon@1/1@TU5116:exon0001	2	+
+Synechocystis_pSYSM	103621	104423	TU5117@TU5117@protein_coding@exon@1/1@TU5117:exon0001	2	+
+Synechocystis_pSYSM	105275	105474	TU5118@TU5118@protein_coding@exon@1/1@TU5118:exon0001	2	+
+Synechocystis_pSYSM	106391	106493	TU5120@TU5120@protein_coding@exon@1/1@TU5120:exon0001	2	+
+Synechocystis_pSYSM	105314	106434	TU5119@TU5119@protein_coding@exon@1/1@TU5119:exon0001	2	-
+Synechocystis_pSYSM	106533	107956	TU5121@TU5121@protein_coding@exon@1/1@TU5121:exon0001	2	+
+Synechocystis_pSYSM	108226	109882	TU5122@TU5122@protein_coding@exon@1/1@TU5122:exon0001	2	+
+Synechocystis_pSYSM	110124	110355	TU5123@TU5123@protein_coding@exon@1/1@TU5123:exon0001	2	+
+Synechocystis_pSYSM	110355	110457	TU5124@TU5124@protein_coding@exon@1/1@TU5124:exon0001	2	+
+Synechocystis_pSYSM	112134	112236	TU5125@TU5125@protein_coding@exon@1/1@TU5125:exon0001	2	-
+Synechocystis_pSYSM	112351	112453	TU5126@TU5126@protein_coding@exon@1/1@TU5126:exon0001	2	+
+Synechocystis_pSYSM	112811	115425	TU5127@TU5127@protein_coding@exon@1/1@TU5127:exon0001	2	+
+Synechocystis_pSYSM	115240	115390	TU5128@TU5128@protein_coding@exon@1/1@TU5128:exon0001	2	-
+Synechocystis_pSYSM	116010	116621	TU5129@TU5129@protein_coding@exon@1/1@TU5129:exon0001	2	-
+Synechocystis_pSYSM	116623	116726	TU5130@TU5130@protein_coding@exon@1/1@TU5130:exon0001	2	-
+Synechocystis_pSYSM	116899	117884	TU5131@TU5131@protein_coding@exon@1/1@TU5131:exon0001	2	+
+Synechocystis_pSYSM	118367	118429	TU5132@TU5132@protein_coding@exon@1/1@TU5132:exon0001	2	+
+track chr Synechocystis_pSYSM 82316
+track type exon 82316