Mercurial > repos > bgruening > infernal

comparison cmsearch.xml @ 1:55bb96edfc07 draft

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Uploaded
author bgruening
date Thu, 24 Apr 2014 15:02:05 -0400
parents 652f9d550531
children fac157e22e1b
comparison
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0:652f9d550531 1:55bb96edfc07
55 2>&1 55 2>&1
56 ; 56 ;
57 57
58 ## 1. replace all lines starting # (comment lines) 58 ## 1. replace all lines starting # (comment lines)
59 ## 2. replace the first 18 spaces with tabs, 18th field is a free text field (can contain spaces) 59 ## 2. replace the first 18 spaces with tabs, 18th field is a free text field (can contain spaces)
60 sed -e 's/#.*$//' -e '/^$/d' -e 's/ /\t/g' -e 's/\t/ /18g' \$temp_tabular_output > $outfile 60 sed -e 's/#.*$//' -e '/^$/d' -e 's/\s\+/\t/g' -e 's/\t/ /18g' \$temp_tabular_output > $outfile
61 61
62 </command> 62 </command>
63 <inputs> 63 <inputs>
64 64
65 <param name="seqdb" type="data" format="fasta" label="Sequence database"/> 65 <param name="seqdb" type="data" format="fasta" label="Sequence database"/>