Mercurial > repos > bgruening > infernal

comparison test-data/cmalignoutput @ 5:6e18e0b098cd draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author bgruening
date Sat, 21 Jan 2017 17:36:57 -0500
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4:c47a7c52ac4f 5:6e18e0b098cd
1 # STOCKHOLM 1.0
2 #=GF AU Infernal 1.1.2
3
4 mrum-tRNA.1 GGAGCUAUAGCUCAAU..GGC..AGAGCGUUUGGCUGACAU........................................CCAAAAGGUUAUGGGUUCGAUUCCCUUUAGCCCCA
5 #=GR mrum-tRNA.1 PP ****************..***..******************........................................***********************************
6 mrum-tRNA.2 GGGCCCGUAGCUCAGU.uGGG..AGAGCGCUGCCCUUGCAA........................................GGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA
7 #=GR mrum-tRNA.2 PP ****************.****..******************........................................***********************************
8 mrum-tRNA.3 GGGCCCAUAGCUUAGCcaGGU..AGAGCGCUCGGCUCAUAA........................................CCGGGAUGUCAUGGGUUCGAAUCCCAUUGGGCCCA
9 #=GR mrum-tRNA.3 PP *********************..******************........................................***********************************
10 mrum-tRNA.4 AGGCUAGUGGCACAGCcuGGU.cAGCGCGCACGGCUGAUAA........................................CCGUGAGGUCCUGGGUUCGAAUCCCAGCUAGCCUA
11 #=GR mrum-tRNA.4 PP ***************999***.*******************........................................***********************************
12 mrum-tRNA.5 CCCGACUUAGCUCAAUuuGGC..AGAGCGUUGGACUGUAGA........................................UCCAAAUGUUGCUGGUUCAAGUCCGGCAGUCGGGA
13 #=GR mrum-tRNA.5 PP *********************..******************........................................***********************************
14 mrum-tRNA.6 GCUUCUAUGGGGUAAU.cGGC.aAACCCAUCGGACUUUCGA........................................UCCGAUAA-UCCGGGUUCAAAUCCCGGUAGAAGCA
15 #=GR mrum-tRNA.6 PP ****************.****.*******************........................................********.9*************************
16 mrum-tRNA.7 GCUCCGAUGGUGUAGUccGGCcaAUCAUUUCGGCCUUUCGA........................................GCCGAAGA-CUCGGGUUCGAAUCCCGGUCGGAGCA
17 #=GR mrum-tRNA.7 PP ********************9999*****************........................................********.**************************
18 mrum-tRNA.8 GCGGUGUUAGUCCAGCcuGGU.uAAGACUCUAGCCUGCCAC........................................GUUAGAGA-CCCGGGUUCAAAUCCCGGACGCCGCA
19 #=GR mrum-tRNA.8 PP ***************999***.*******************........................................********.**************************
20 mrum-tRNA.9 GCCGGGGUGGCUCAGC.uGGU.uAGAGCGCACGGCUC----auaggguaacuaagcgugcucugacuuuuuuccugggauaCCGUGAGAUCGCGGGUUCGAAUCCCGCCCCCGGCA
21 #=GR mrum-tRNA.9 PP ****************.****.************995....678************************************************************************
22 mrum-tRNA.10 GGUUCUAUAGUUUAAC.aGGU..AAAACAACUGGCUGUUAA........................................CCGGCAGA-UAGGAGUUCGAAUCUUCUUAGAACCG
23 #=GR mrum-tRNA.10 PP ****************.****..******************........................................********.9*************************
24 #=GC SS_cons (((((((,,<<<<___..___.._>>>>,<<<<<_______~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))):
25 #=GC RF gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca
26 //