Mercurial > repos > bgruening > infernal

comparison test-data/cmsearch_input1.cm @ 5:6e18e0b098cd draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author bgruening
date Sat, 21 Jan 2017 17:36:57 -0500
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4:c47a7c52ac4f 5:6e18e0b098cd
1 INFERNAL1/a [1.1.1 | July 2014]
2 NAME tRNA5
3 STATES 230
4 NODES 61
5 CLEN 72
6 W 89
7 ALPH RNA
8 RF no
9 CONS yes
10 MAP yes
11 DATE Mon Jun 27 12:35:45 2016
12 COM [1] ./src/cmbuild tRNA5.cm tutorial/tRNA5.sto
13 COM [2] cmcalibrate tRNA5.cm
14 PBEGIN 0.05
15 PEND 0.05
16 WBETA 1e-07
17 QDBBETA1 1e-07
18 QDBBETA2 1e-15
19 N2OMEGA 1.52588e-05
20 N3OMEGA 1.52588e-05
21 ELSELF -0.08926734
22 NSEQ 5
23 EFFN 3.725586
24 CKSUM 3535941971
25 NULL 0.000 0.000 0.000 0.000
26 EFP7GF -5.5288 0.72958
27 ECMLC 0.85563 -4.01853 2.43520 1600000 300168 0.003998
28 ECMGC 0.39437 -17.41037 -4.06685 1600000 77168 0.005183
29 ECMLI 0.73047 -3.70982 3.57712 1600000 245977 0.004879
30 ECMGI 0.44078 -12.13534 -0.86006 1600000 57603 0.006944
31 CM
32 [ ROOT 0 ] - - - - - -
33 S 0 -1 0 1 4 0 1 89 108 -7.419 -8.664 -0.055 -5.118
34 IL 1 1 2 1 4 3 28 90 110 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000
35 IR 2 2 3 2 3 4 30 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
36 [ MATR 1 ] - 74 - a - -
37 MR 3 2 3 5 5 4 32 89 108 -7.593 -0.028 -7.408 -7.620 -8.512 0.474 -1.199 0.305 -0.089
38 D 4 2 3 5 5 1 24 87 107 -5.352 -0.707 -2.978 -4.409 -2.404
39 IR 5 5 3 5 5 3 28 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
40 [ MATP 2 ] 1 73 g c - -
41 MP 6 5 3 10 6 5 32 88 107 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.831 -2.997 -3.795 0.617 -3.618 -4.452 0.854 -3.918 -3.870 2.837 -4.276 -0.713 1.871 -3.843 -1.175 -2.703
42 ML 7 5 3 10 6 3 26 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
43 MR 8 5 3 10 6 3 25 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
44 D 9 5 3 10 6 0 21 84 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
45 IL 10 10 5 10 6 3 27 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
46 IR 11 11 6 11 5 3 27 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
47 [ MATP 3 ] 2 72 C G - -
48 MP 12 11 6 16 6 5 31 86 105 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.097 -3.805 -3.998 0.021 -3.009 -4.646 3.103 -3.661 -3.977 1.529 -4.392 -1.585 0.835 -4.247 -0.625 -2.808
49 ML 13 11 6 16 6 2 25 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
50 MR 14 11 6 16 6 2 25 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
51 D 15 11 6 16 6 0 21 82 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
52 IL 16 16 5 16 6 3 27 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
53 IR 17 17 6 17 5 3 27 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
54 [ MATP 4 ] 3 71 c g - -
55 MP 18 17 6 22 6 5 29 84 103 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.141 -2.880 -3.222 0.733 -2.762 -4.023 2.237 -3.232 -3.242 1.678 -3.747 0.537 1.616 -3.340 -0.447 -2.158
56 ML 19 17 6 22 6 2 25 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
57 MR 20 17 6 22 6 2 24 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
58 D 21 17 6 22 6 0 20 80 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
59 IL 22 22 5 22 6 3 26 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
60 IR 23 23 6 23 5 3 26 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
61 [ MATP 5 ] 4 70 g c - -
62 MP 24 23 6 28 6 5 28 82 101 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.477 -2.737 -3.484 0.861 -3.437 -4.224 1.956 -3.685 -3.594 2.509 -4.028 0.683 0.624 -3.528 -1.017 -2.419
63 ML 25 23 6 28 6 2 24 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
64 MR 26 23 6 28 6 2 24 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
65 D 27 23 6 28 6 0 20 78 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
66 IL 28 28 5 28 6 3 25 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
67 IR 29 29 6 29 5 3 25 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
68 [ MATP 6 ] 5 69 g c - -
69 MP 30 29 6 34 6 5 26 80 99 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -2.565 0.048 -2.684 1.825 -2.755 -3.485 0.996 -3.019 -2.788 2.050 -3.293 -0.374 0.757 -2.774 0.549 -1.819
70 ML 31 29 6 34 6 2 23 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
71 MR 32 29 6 34 6 2 23 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
72 D 33 29 6 34 6 0 19 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
73 IL 34 34 5 34 6 2 24 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
74 IR 35 35 6 35 5 3 24 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
75 [ MATP 7 ] 6 68 c g - -
76 MP 36 35 6 40 6 5 24 78 97 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.250 -3.161 -3.321 0.517 -2.657 -4.117 2.088 -3.215 -3.310 1.474 -3.823 -1.143 2.088 -3.483 0.783 -2.234
77 ML 37 35 6 40 6 2 22 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
78 MR 38 35 6 40 6 2 21 77 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
79 D 39 35 6 40 6 0 19 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
80 IL 40 40 5 40 6 2 23 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
81 IR 41 41 6 41 5 2 23 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
82 [ MATP 8 ] 7 67 A U - -
83 MP 42 41 6 46 4 4 22 76 95 -7.543 -7.750 -0.035 -6.164 -3.769 -3.134 -3.802 3.011 -3.544 -4.775 0.728 -3.793 -3.752 0.821 -4.250 -0.784 1.443 -4.133 -1.238 -2.690
84 ML 43 41 6 46 4 1 21 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
85 MR 44 41 6 46 4 1 20 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
86 D 45 41 6 46 4 0 19 74 94 -4.568 -4.250 -2.265 -0.520
87 IL 46 46 5 46 4 2 22 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
88 IR 47 47 6 47 3 2 21 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
89 [ MATL 9 ] 8 - U - - -
90 ML 48 47 6 50 3 2 20 73 93 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
91 D 49 47 6 50 3 0 18 72 92 -6.174 -1.687 -0.566
92 IL 50 50 3 50 3 2 20 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
93 [ MATL 10 ] 9 - A - - -
94 ML 51 50 3 53 2 1 19 72 92 -9.006 -0.003 1.048 -1.964 0.381 -1.421
95 D 52 50 3 53 2 0 18 71 91 -8.445 -0.004
96 IL 53 53 3 53 2 1 19 73 93 -1.823 -0.479 0.000 0.000 0.000 0.000
97 [ BIF 11 ] - - - - - -
98 B 54 53 3 124 55 0 18 71 91
99 [ BEGR 42 ] - - - - - -
100 S 55 54 1 56 3 0 0 36 55 -8.524 -0.014 -7.178
101 IL 56 56 2 56 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
102 [ MATL 43 ] 45 - A - - -
103 ML 57 56 2 59 3 1 1 36 55 -8.524 -0.014 -7.178 1.385 -1.618 -1.684 -0.412
104 D 58 56 2 59 3 0 0 35 54 -6.174 -1.687 -0.566
105 IL 59 59 3 59 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
106 [ MATL 44 ] 46 - G - - -
107 ML 60 59 3 62 3 1 1 35 54 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
108 D 61 59 3 62 3 0 0 34 53 -6.174 -1.687 -0.566
109 IL 62 62 3 62 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
110 [ MATL 45 ] 47 - g - - -
111 ML 63 62 3 65 3 1 1 34 52 -8.524 -0.481 -1.832 0.586 -2.024 0.919 -1.466
112 D 64 62 3 65 3 0 0 33 52 -6.174 -1.687 -0.566
113 IL 65 65 3 65 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
114 [ MATL 46 ] 48 - U - - -
115 ML 66 65 3 68 3 1 1 33 51 -8.062 -0.019 -6.716 -1.668 -1.633 -2.411 1.667
116 D 67 65 3 68 3 0 0 31 50 -8.417 -0.227 -2.808
117 IL 68 68 3 68 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
118 [ MATL 47 ] 49 - C - - -
119 ML 69 68 3 71 5 1 1 31 50 -7.593 -0.028 -7.408 -7.620 -8.512 -1.578 1.336 -2.466 -0.059
120 D 70 68 3 71 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508
121 IL 71 71 3 71 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
122 [ MATP 48 ] 50 66 C G - -
123 MP 72 71 3 76 6 2 2 30 49 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.063 -3.835 -3.975 1.367 -2.984 -4.641 3.137 -3.636 -3.945 0.196 -4.368 -1.641 0.814 -4.253 -0.622 -2.801
124 ML 73 71 3 76 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
125 MR 74 71 3 76 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
126 D 75 71 3 76 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
127 IL 76 76 5 76 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
128 IR 77 77 6 77 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
129 [ MATP 49 ] 51 65 g c - -
130 MP 78 77 6 82 6 2 2 28 47 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.269 -3.002 -3.316 0.607 -2.825 -4.080 1.486 -3.318 -3.360 2.123 -3.845 -0.940 1.986 -3.442 0.799 -2.268
131 ML 79 77 6 82 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
132 MR 80 77 6 82 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
133 D 81 77 6 82 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
134 IL 82 82 5 82 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
135 IR 83 83 6 83 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
136 [ MATP 50 ] 52 64 g c - -
137 MP 84 83 6 88 6 2 2 26 45 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.573 -3.001 -3.543 0.634 -3.168 -4.231 1.794 -3.603 -3.657 2.626 -4.078 -0.813 0.766 -3.618 0.675 -2.477
138 ML 85 83 6 88 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
139 MR 86 83 6 88 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
140 D 87 83 6 88 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
141 IL 88 88 5 88 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
142 IR 89 89 6 89 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
143 [ MATP 51 ] 53 63 g c - -
144 MP 90 89 6 94 6 2 2 24 43 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.680 -2.656 -3.624 1.495 -4.000 -4.305 0.538 -4.011 -3.825 2.937 -4.200 -0.344 1.037 -3.597 -1.457 -2.574
145 ML 91 89 6 94 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
146 MR 92 89 6 94 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
147 D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
148 IL 94 94 5 94 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
149 IR 95 95 6 95 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
150 [ MATP 52 ] 54 62 G C - -
151 MP 96 95 6 100 4 2 2 22 41 -7.543 -7.750 -0.035 -6.164 -5.814 -3.622 -6.104 -0.561 -6.715 -5.090 -1.814 -6.360 -4.961 3.816 -5.237 -1.382 -2.178 -5.150 -3.925 -4.967
152 ML 97 95 6 100 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
153 MR 98 95 6 100 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
154 D 99 95 6 100 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
155 IL 100 100 5 100 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
156 IR 101 101 6 101 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
157 [ MATL 53 ] 55 - U - - -
158 ML 102 101 6 104 3 1 1 20 38 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
159 D 103 101 6 104 3 0 0 19 38 -6.174 -1.687 -0.566
160 IL 104 104 3 104 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
161 [ MATL 54 ] 56 - U - - -
162 ML 105 104 3 107 3 1 1 18 37 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
163 D 106 104 3 107 3 0 0 18 37 -6.174 -1.687 -0.566
164 IL 107 107 3 107 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
165 [ MATL 55 ] 57 - C - - -
166 ML 108 107 3 110 3 1 1 17 36 -8.524 -0.014 -7.178 -3.081 1.849 -3.880 -2.250
167 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566
168 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
169 [ MATL 56 ] 58 - G - - -
170 ML 111 110 3 113 3 1 1 16 34 -8.524 -0.014 -7.178 -0.198 -2.380 1.409 -1.835
171 D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566
172 IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
173 [ MATL 57 ] 59 - A - - -
174 ML 114 113 3 116 3 1 1 14 33 -8.524 -0.014 -7.178 1.878 -3.490 -3.019 -3.147
175 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566
176 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
177 [ MATL 58 ] 60 - U - - -
178 ML 117 116 3 119 3 1 1 13 31 -8.524 -0.014 -7.178 -1.468 -0.407 -2.235 1.418
179 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566
180 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
181 [ MATL 59 ] 61 - U - - -
182 ML 120 119 3 122 2 1 1 1 1 * 0.000 -1.239 0.314 -2.046 1.064
183 D 121 119 3 122 2 0 0 0 0 * 0.000
184 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
185 [ END 60 ] - - - - - -
186 E 123 122 3 -1 0 0 0 0 0
187 [ BEGL 12 ] - - - - - -
188 S 124 54 1 125 1 0 3 49 68 0.000
189 [ BIF 13 ] - - - - - -
190 B 125 124 1 126 173 0 3 49 68
191 [ BEGL 14 ] - - - - - -
192 S 126 125 1 127 4 0 0 30 48 -0.035 -7.164 -6.572 -7.212
193 [ MATP 15 ] 10 26 G C - -
194 MP 127 126 1 131 6 2 2 30 48 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.768 -3.151 -4.805 0.251 -5.796 -4.949 -0.981 -5.231 -4.514 3.516 -4.857 0.895 -1.246 -4.551 -3.005 -3.683
195 ML 128 126 1 131 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
196 MR 129 126 1 131 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
197 D 130 126 1 131 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
198 IL 131 131 5 131 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
199 IR 132 132 6 132 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
200 [ MATP 16 ] 11 25 c g - -
201 MP 133 132 6 137 6 2 2 28 46 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.380 -4.331 -4.172 -0.461 -2.935 -4.679 2.953 -3.697 -4.172 -0.278 -4.524 -2.247 2.367 -4.479 -0.580 -2.998
202 ML 134 132 6 137 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
203 MR 135 132 6 137 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
204 D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
205 IL 137 137 5 137 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
206 IR 138 138 6 138 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
207 [ MATP 17 ] 12 24 g c - -
208 MP 139 138 6 143 6 2 2 26 44 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.838 -2.993 -3.801 0.619 -3.635 -4.454 0.839 -3.930 -3.877 2.852 -4.281 -0.708 1.851 -3.845 -1.190 -2.710
209 ML 140 138 6 143 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
210 MR 141 138 6 143 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
211 D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
212 IL 143 143 5 143 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
213 IR 144 144 6 144 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
214 [ MATP 18 ] 13 23 c g - -
215 MP 145 144 6 149 4 2 2 24 42 -7.543 -7.750 -0.035 -6.164 -3.454 -3.490 -3.467 0.042 -2.692 -4.152 2.807 -3.318 -3.483 0.166 -3.945 -1.653 0.946 -3.679 1.162 0.637
216 ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
217 MR 147 144 6 149 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
218 D 148 144 6 149 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520
219 IL 149 149 5 149 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
220 IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
221 [ MATL 19 ] 14 - A - - -
222 ML 151 150 6 153 3 1 1 20 39 -8.524 -0.014 -7.178 1.878 -3.490 -3.019 -3.147
223 D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566
224 IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
225 [ MATL 20 ] 15 - g - - -
226 ML 154 153 3 156 3 1 1 19 38 -8.524 -0.014 -7.178 0.586 -2.024 0.919 -1.466
227 D 155 153 3 156 3 0 0 19 37 -6.174 -1.687 -0.566
228 IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
229 [ MATL 21 ] 16 - U - - -
230 ML 157 156 3 159 3 1 1 18 36 -1.899 -0.464 -7.178 -1.468 -0.407 -2.235 1.418
231 D 158 156 3 159 3 0 0 16 35 -6.174 -1.687 -0.566
232 IL 159 159 3 159 3 1 1 18 36 -2.374 -0.363 -5.074 0.000 0.000 0.000 0.000
233 [ MATL 22 ] 18 - G - - -
234 ML 160 159 3 162 3 1 1 16 34 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
235 D 161 159 3 162 3 0 0 16 35 -6.174 -1.687 -0.566
236 IL 162 162 3 162 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
237 [ MATL 23 ] 19 - G - - -
238 ML 163 162 3 165 3 1 1 14 33 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
239 D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566
240 IL 165 165 3 165 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
241 [ MATL 24 ] 20 - u - - -
242 ML 166 165 3 168 3 1 1 11 23 -1.854 -0.481 -7.178 -0.664 -0.325 -0.613 0.939
243 D 167 165 3 168 3 0 0 9 20 -6.174 -1.687 -0.566
244 IL 168 168 3 168 3 1 1 11 22 -2.396 -0.357 -5.096 0.000 0.000 0.000 0.000
245 [ MATL 25 ] 22 - A - - -
246 ML 169 168 3 171 2 1 1 1 1 * 0.000 1.878 -3.490 -3.019 -3.147
247 D 170 168 3 171 2 0 0 0 0 * 0.000
248 IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
249 [ END 26 ] - - - - - -
250 E 172 171 3 -1 0 0 0 0 0
251 [ BEGR 27 ] - - - - - -
252 S 173 125 1 174 3 0 0 32 50 -8.524 -0.014 -7.178
253 IL 174 174 2 174 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
254 [ MATL 28 ] 27 - g - - -
255 ML 175 174 2 177 5 1 1 31 50 -7.593 -0.028 -7.408 -7.620 -8.512 0.512 -2.047 0.983 -1.490
256 D 176 174 2 177 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508
257 IL 177 177 3 177 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
258 [ MATP 29 ] 28 44 c g - -
259 MP 178 177 3 182 6 2 2 30 49 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -2.996 -2.785 -3.094 0.747 -2.684 -3.890 2.204 -3.144 -3.118 1.704 -3.626 0.455 1.175 -3.212 0.643 -2.072
260 ML 179 177 3 182 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
261 MR 180 177 3 182 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
262 D 181 177 3 182 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
263 IL 182 182 5 182 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
264 IR 183 183 6 183 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
265 [ MATP 30 ] 29 43 c g - -
266 MP 184 183 6 188 6 2 2 28 47 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.660 -3.462 -3.663 0.355 -2.818 -4.407 2.681 -3.427 -3.639 1.512 -4.115 -1.306 1.763 -3.844 -0.432 -2.489
267 ML 185 183 6 188 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
268 MR 186 183 6 188 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
269 D 187 183 6 188 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
270 IL 188 188 5 188 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
271 IR 189 189 6 189 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
272 [ MATP 31 ] 30 42 a u - -
273 MP 190 189 6 194 6 2 2 26 45 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.311 -3.146 -3.360 2.221 -2.772 -4.127 2.025 -3.303 -3.378 0.846 -3.868 -1.127 1.693 -3.528 -0.491 -2.313
274 ML 191 189 6 194 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
275 MR 192 189 6 194 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
276 D 193 189 6 194 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
277 IL 194 194 5 194 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
278 IR 195 195 6 195 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
279 [ MATP 32 ] 31 41 g c - -
280 MP 196 195 6 200 6 2 2 24 43 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.453 -2.737 -3.468 0.855 -3.398 -4.215 1.983 -3.656 -3.568 2.448 -4.006 0.791 0.648 -3.520 -0.989 -2.403
281 ML 197 195 6 200 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
282 MR 198 195 6 200 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
283 D 199 195 6 200 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
284 IL 200 200 5 200 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
285 IR 201 201 6 201 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
286 [ MATP 33 ] 32 40 c g - -
287 MP 202 201 6 206 4 2 2 22 41 -7.543 -7.750 -0.035 -6.164 -3.332 -2.890 -3.380 1.837 -3.037 -4.188 2.208 -3.435 -3.424 1.867 -3.910 -0.719 0.913 -3.503 -0.696 -2.309
288 ML 203 201 6 206 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
289 MR 204 201 6 206 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
290 D 205 201 6 206 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
291 IL 206 206 5 206 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
292 IR 207 207 6 207 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
293 [ MATL 34 ] 33 - c - - -
294 ML 208 207 6 210 3 1 1 20 38 -8.524 -0.014 -7.178 -1.256 0.893 -2.113 0.579
295 D 209 207 6 210 3 0 0 19 38 -6.174 -1.687 -0.566
296 IL 210 210 3 210 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
297 [ MATL 35 ] 34 - U - - -
298 ML 211 210 3 213 3 1 1 18 37 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
299 D 212 210 3 213 3 0 0 18 37 -6.174 -1.687 -0.566
300 IL 213 213 3 213 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
301 [ MATL 36 ] 35 - g - - -
302 ML 214 213 3 216 3 1 1 17 36 -8.524 -0.014 -7.178 -0.763 -1.427 0.837 0.325
303 D 215 213 3 216 3 0 0 17 35 -6.174 -1.687 -0.566
304 IL 216 216 3 216 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
305 [ MATL 37 ] 36 - u - - -
306 ML 217 216 3 219 3 1 1 16 34 -8.524 -0.014 -7.178 0.037 -0.330 -0.381 0.496
307 D 218 216 3 219 3 0 0 16 34 -6.174 -1.687 -0.566
308 IL 219 219 3 219 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
309 [ MATL 38 ] 37 - c - - -
310 ML 220 219 3 222 3 1 1 14 33 -8.524 -0.014 -7.178 0.403 0.783 -1.648 -0.649
311 D 221 219 3 222 3 0 0 15 33 -6.174 -1.687 -0.566
312 IL 222 222 3 222 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
313 [ MATL 39 ] 38 - A - - -
314 ML 223 222 3 225 3 1 1 13 31 -8.524 -0.014 -7.178 1.037 -1.963 0.397 -1.419
315 D 224 222 3 225 3 0 0 13 32 -6.174 -1.687 -0.566
316 IL 225 225 3 225 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
317 [ MATL 40 ] 39 - a - - -
318 ML 226 225 3 228 2 1 1 1 1 * 0.000 0.957 0.166 -1.522 -0.764
319 D 227 225 3 228 2 0 0 0 0 * 0.000
320 IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
321 [ END 41 ] - - - - - -
322 E 229 228 3 -1 0 0 0 0 0
323 //
324 HMMER3/f [i1.1.1 | July 2014]
325 NAME tRNA5
326 LENG 72
327 MAXL 152
328 ALPH RNA
329 RF no
330 MM no
331 CONS yes
332 CS yes
333 MAP yes
334 DATE Mon Jun 27 12:35:45 2016
335 COM [1] ./src/cmbuild tRNA5.cm tutorial/tRNA5.sto
336 NSEQ 5
337 EFFN 4.575195
338 CKSUM 3535941971
339 STATS LOCAL MSV -8.3361 0.72958
340 STATS LOCAL VITERBI -9.7423 0.72958
341 STATS LOCAL FORWARD -2.8398 0.72958
342 HMM A C G U
343 m->m m->i m->d i->m i->i d->m d->d
344 COMPO 1.54533 1.43782 1.21668 1.37396
345 1.38629 1.38629 1.38629 1.38629
346 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 *
347 1 2.27104 2.21243 0.67362 1.28194 1 G - - (
348 1.38629 1.38629 1.38629 1.38629
349 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
350 2 2.71979 0.53764 1.58904 1.92505 2 C - - (
351 1.38629 1.38629 1.38629 1.38629
352 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
353 3 2.13247 1.12928 1.19870 1.36023 3 c - - (
354 1.38629 1.38629 1.38629 1.38629
355 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
356 4 2.06386 1.33928 0.73468 2.02995 4 g - - (
357 1.38629 1.38629 1.38629 1.38629
358 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
359 5 1.11916 2.01343 1.13651 1.51879 5 a - - (
360 1.38629 1.38629 1.38629 1.38629
361 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
362 6 2.27600 1.26221 1.56184 0.90503 6 u - - (
363 1.38629 1.38629 1.38629 1.38629
364 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
365 7 0.55854 2.34742 2.06069 1.58488 7 A - - (
366 1.38629 1.38629 1.38629 1.38629
367 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
368 8 3.41131 3.24840 3.95063 0.09549 8 U - - ,
369 1.38629 1.38629 1.38629 1.38629
370 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
371 9 0.62589 2.93067 1.09257 2.57049 9 A - - ,
372 1.38629 1.38629 1.38629 1.38629
373 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
374 10 2.58478 3.48701 0.15236 3.34349 10 G - - <
375 1.38629 1.38629 1.38629 1.38629
376 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
377 11 3.04360 0.66824 2.81745 0.96766 11 C - - <
378 1.38629 1.38629 1.38629 1.38629
379 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
380 12 2.27167 2.22390 0.66329 1.29638 12 G - - <
381 1.38629 1.38629 1.38629 1.38629
382 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
383 13 2.70763 0.72972 2.52177 0.99171 13 c - - <
384 1.38629 1.38629 1.38629 1.38629
385 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
386 14 0.06447 4.06946 3.72356 3.85378 14 A - - _
387 1.38629 1.38629 1.38629 1.38629
388 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
389 15 0.96309 2.96228 0.71023 2.58952 15 g - - _
390 1.38629 1.38629 1.38629 1.38629
391 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
392 16 2.58013 1.68600 3.11568 0.36438 16 U - - _
393 1.38629 1.38629 1.38629 1.38629
394 0.36284 1.23646 4.27667 0.09305 2.42079 1.09861 0.40547
395 17 3.50204 4.46790 0.06149 4.01568 18 G - - _
396 1.38629 1.38629 1.38629 1.38629
397 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
398 18 3.50204 4.46790 0.06149 4.01568 19 G - - _
399 1.38629 1.38629 1.38629 1.38629
400 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
401 19 1.92921 1.61736 1.81487 0.70632 20 u - - _
402 1.38629 1.38629 1.38629 1.38629
403 0.37560 1.20654 4.27667 0.09038 2.44862 1.09861 0.40547
404 20 0.06447 4.06946 3.72356 3.85378 22 A - - _
405 1.38629 1.38629 1.38629 1.38629
406 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
407 21 2.10278 2.68978 0.46988 1.68787 23 G - - >
408 1.38629 1.38629 1.38629 1.38629
409 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
410 22 1.38592 0.72007 2.05285 2.00384 24 c - - >
411 1.38629 1.38629 1.38629 1.38629
412 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
413 23 1.05742 2.98038 0.61496 2.79344 25 G - - >
414 1.38629 1.38629 1.38629 1.38629
415 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
416 24 3.52889 0.29960 3.29055 1.64863 26 C - - >
417 1.38629 1.38629 1.38629 1.38629
418 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
419 25 1.01810 2.97712 0.66580 2.60482 27 G - - ,
420 1.38629 1.38629 1.38629 1.38629
421 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
422 26 2.11085 1.15042 1.18985 1.35443 28 c - - <
423 1.38629 1.38629 1.38629 1.38629
424 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
425 27 2.42824 0.83921 1.56647 1.30573 29 c - - <
426 1.38629 1.38629 1.38629 1.38629
427 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
428 28 1.09889 1.29935 2.02826 1.33756 30 a - - <
429 1.38629 1.38629 1.38629 1.38629
430 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
431 29 2.06898 1.31812 0.74979 2.01303 31 g - - <
432 1.38629 1.38629 1.38629 1.38629
433 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
434 30 1.36950 1.15928 1.31013 1.81850 32 c - - <
435 1.38629 1.38629 1.38629 1.38629
436 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
437 31 2.40938 0.72219 3.02139 0.97894 33 c - - _
438 1.38629 1.38629 1.38629 1.38629
439 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
440 32 3.41131 3.24840 3.95063 0.09549 34 U - - _
441 1.38629 1.38629 1.38629 1.38629
442 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
443 33 2.03026 2.49922 0.75131 1.15581 35 g - - _
444 1.38629 1.38629 1.38629 1.38629
445 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
446 34 1.37091 1.61913 1.64530 1.03536 36 u - - _
447 1.38629 1.38629 1.38629 1.38629
448 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
449 35 1.09596 0.79030 2.66885 1.94670 37 c - - _
450 1.38629 1.38629 1.38629 1.38629
451 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
452 36 0.63350 2.92991 1.08102 2.56892 38 A - - _
453 1.38629 1.38629 1.38629 1.38629
454 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
455 37 0.68448 1.23998 2.57183 2.04128 39 A - - _
456 1.38629 1.38629 1.38629 1.38629
457 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
458 38 2.05098 1.42195 1.06925 1.24869 40 g - - >
459 1.38629 1.38629 1.38629 1.38629
460 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
461 39 2.25157 1.00742 1.23141 1.43664 41 c - - >
462 1.38629 1.38629 1.38629 1.38629
463 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
464 40 1.49091 2.19537 1.18474 1.02809 42 u - - >
465 1.38629 1.38629 1.38629 1.38629
466 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
467 41 1.46309 1.66242 0.76188 2.18914 43 g - - >
468 1.38629 1.38629 1.38629 1.38629
469 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
470 42 1.84429 1.51321 0.88732 1.56112 44 g - - >
471 1.38629 1.38629 1.38629 1.38629
472 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
473 43 0.38710 2.63412 2.69028 1.70743 45 A - - ,
474 1.38629 1.38629 1.38629 1.38629
475 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
476 44 3.50204 4.46790 0.06149 4.01568 46 G - - ,
477 1.38629 1.38629 1.38629 1.38629
478 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
479 45 0.96309 2.96228 0.71023 2.58952 47 g - - ,
480 1.38629 1.38629 1.38629 1.38629
481 0.37560 4.27667 1.20654 1.46634 0.26236 1.09861 0.40547
482 46 2.76487 2.70273 3.28806 0.18312 48 U - - ,
483 1.38629 1.38629 1.38629 1.38629
484 0.03964 3.94071 3.94071 1.46634 0.26236 0.08877 2.46575
485 47 2.65665 0.41541 3.29031 1.45884 49 C - - ,
486 1.38629 1.38629 1.38629 1.38629
487 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
488 48 1.72807 0.51473 2.49712 1.94920 50 C - - <
489 1.38629 1.38629 1.38629 1.38629
490 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
491 49 2.23405 1.71156 1.13675 0.93787 51 u - - <
492 1.38629 1.38629 1.38629 1.38629
493 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
494 50 2.24174 1.47214 0.80734 1.52210 52 g - - <
495 1.38629 1.38629 1.38629 1.38629
496 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
497 51 1.62002 2.40165 0.60094 1.81254 53 G - - <
498 1.38629 1.38629 1.38629 1.38629
499 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
500 52 3.13623 4.03650 0.08313 3.98115 54 G - - <
501 1.38629 1.38629 1.38629 1.38629
502 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
503 53 3.41131 3.24840 3.95063 0.09549 55 U - - _
504 1.38629 1.38629 1.38629 1.38629
505 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
506 54 3.41131 3.24840 3.95063 0.09549 56 U - - _
507 1.38629 1.38629 1.38629 1.38629
508 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
509 55 3.81775 0.07857 4.34279 3.20425 57 C - - _
510 1.38629 1.38629 1.38629 1.38629
511 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
512 56 1.55092 3.20619 0.37228 2.84263 58 G - - _
513 1.38629 1.38629 1.38629 1.38629
514 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
515 57 0.06447 4.06946 3.72356 3.85378 59 A - - _
516 1.38629 1.38629 1.38629 1.38629
517 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
518 58 2.58013 1.68600 3.11568 0.36438 60 U - - _
519 1.38629 1.38629 1.38629 1.38629
520 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
521 59 2.39994 1.14144 2.97016 0.61874 61 U - - _
522 1.38629 1.38629 1.38629 1.38629
523 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
524 60 4.11656 0.10126 3.89068 2.82057 62 C - - >
525 1.38629 1.38629 1.38629 1.38629
526 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
527 61 1.95700 0.67131 2.21870 1.43159 63 C - - >
528 1.38629 1.38629 1.38629 1.38629
529 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
530 62 2.18076 0.86710 1.10730 1.99196 64 c - - >
531 1.38629 1.38629 1.38629 1.38629
532 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
533 63 1.27825 1.21396 1.24116 1.99945 65 c - - >
534 1.38629 1.38629 1.38629 1.38629
535 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
536 64 2.19639 2.68263 0.47103 1.62938 66 G - - >
537 1.38629 1.38629 1.38629 1.38629
538 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
539 65 1.68678 2.30864 2.17351 0.50798 67 U - - )
540 1.38629 1.38629 1.38629 1.38629
541 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
542 66 1.21618 1.66846 0.95030 2.05201 68 g - - )
543 1.38629 1.38629 1.38629 1.38629
544 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
545 67 2.09329 1.05549 1.48837 1.19416 69 c - - )
546 1.38629 1.38629 1.38629 1.38629
547 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
548 68 2.26917 0.96322 1.25225 1.47369 70 c - - )
549 1.38629 1.38629 1.38629 1.38629
550 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
551 69 1.53154 1.55221 1.02428 1.54664 71 g - - )
552 1.38629 1.38629 1.38629 1.38629
553 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
554 70 2.18028 1.66521 0.48878 2.47139 72 G - - )
555 1.38629 1.38629 1.38629 1.38629
556 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
557 71 1.37162 0.72882 2.04389 2.00766 73 c - - )
558 1.38629 1.38629 1.38629 1.38629
559 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
560 72 1.04988 2.29119 1.14633 1.46503 74 a - - :
561 1.38629 1.38629 1.38629 1.38629
562 0.01418 4.26268 * 1.46634 0.26236 0.00000 *
563 //