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comparison test-data/cmsearch_result_tRNA5_mrum.out @ 5:6e18e0b098cd draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author bgruening
date Sat, 21 Jan 2017 17:36:57 -0500
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4:c47a7c52ac4f 5:6e18e0b098cd
1 # cmsearch :: search CM(s) against a sequence database
2 # INFERNAL 1.1 (June 2012)
3 # Copyright (C) 2012 Howard Hughes Medical Institute.
4 # Freely distributed under the GNU General Public License (GPLv3).
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query CM file: tRNA5.c.cm
7 # target sequence database: mrum-genome.fa
8 # number of worker threads: 2
9 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
10
11 Query: tRNA5 [CLEN=72]
12 Hit scores:
13 rank E-value score bias sequence start end mdl trunc gc description
14 ---- --------- ------ ----- ----------- ------- ------- --- ----- ---- -----------
15 (1) ! 1.3e-18 71.5 0.0 NC_013790.1 362026 361955 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome
16 (2) ! 3.3e-18 70.2 0.0 NC_013790.1 2585265 2585193 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome
17 (3) ! 9e-18 68.8 0.0 NC_013790.1 762490 762562 + cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome
18 (4) ! 9e-18 68.8 0.0 NC_013790.1 2041704 2041632 - cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome
19 (5) ! 2.5e-17 67.4 0.0 NC_013790.1 2351254 2351181 - cm no 0.62 Methanobrevibacter ruminantium M1 chromosome, complete genome
20 (6) ! 3e-17 67.2 0.0 NC_013790.1 735136 735208 + cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome
21 (7) ! 5.2e-17 66.4 0.0 NC_013790.1 2186013 2185941 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome
22 (8) ! 1.6e-16 64.8 0.0 NC_013790.1 2350593 2350520 - cm no 0.66 Methanobrevibacter ruminantium M1 chromosome, complete genome
23 (9) ! 2.8e-16 64.1 0.0 NC_013790.1 2585187 2585114 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome
24 (10) ! 9.1e-16 62.5 0.0 NC_013790.1 662185 662259 + cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome
25 (11) ! 1.2e-15 62.1 0.0 NC_013790.1 360887 360815 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome
26 (12) ! 1.6e-15 61.7 0.0 NC_013790.1 2350984 2350911 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome
27 (13) ! 3.3e-15 60.7 0.0 NC_013790.1 2186090 2186019 - cm no 0.54 Methanobrevibacter ruminantium M1 chromosome, complete genome
28 (14) ! 4.1e-15 60.4 0.0 NC_013790.1 2680159 2680233 + cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome
29 (15) ! 7.9e-15 59.5 0.0 NC_013790.1 2749839 2749768 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome
30 (16) ! 7.9e-15 59.5 0.0 NC_013790.1 2749945 2749874 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome
31 (17) ! 9.8e-15 59.2 0.0 NC_013790.1 361676 361604 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome
32 (18) ! 1e-14 59.2 0.0 NC_013790.1 2585073 2584999 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome
33 (19) ! 1.1e-14 59.1 0.0 NC_013790.1 2130422 2130349 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome
34 (20) ! 1.2e-14 58.9 0.0 NC_013790.1 546056 545947 - cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome
35 (21) ! 3.9e-14 57.3 0.0 NC_013790.1 361915 361844 - cm no 0.42 Methanobrevibacter ruminantium M1 chromosome, complete genome
36 (22) ! 5.1e-14 57.0 0.0 NC_013790.1 97724 97795 + cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome
37 (23) ! 6.1e-14 56.7 0.0 NC_013790.1 2350717 2350646 - cm no 0.68 Methanobrevibacter ruminantium M1 chromosome, complete genome
38 (24) ! 8e-14 56.3 0.0 NC_013790.1 1873887 1873815 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome
39 (25) ! 1.4e-13 55.6 0.0 NC_013790.1 360730 360659 - cm no 0.40 Methanobrevibacter ruminantium M1 chromosome, complete genome
40 (26) ! 3.5e-13 54.3 0.0 NC_013790.1 2680310 2680384 + cm no 0.52 Methanobrevibacter ruminantium M1 chromosome, complete genome
41 (27) ! 3.6e-13 54.3 0.0 NC_013790.1 2664806 2664732 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome
42 (28) ! 3.6e-13 54.3 0.0 NC_013790.1 361061 360989 - cm no 0.41 Methanobrevibacter ruminantium M1 chromosome, complete genome
43 (29) ! 7.5e-13 53.3 0.0 NC_013790.1 2130335 2130262 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome
44 (30) ! 7.6e-13 53.3 0.0 NC_013790.1 2151672 2151745 + cm no 0.65 Methanobrevibacter ruminantium M1 chromosome, complete genome
45 (31) ! 2.9e-12 51.4 0.0 NC_013790.1 319297 319370 + cm no 0.62 Methanobrevibacter ruminantium M1 chromosome, complete genome
46 (32) ! 3.7e-12 51.1 0.0 NC_013790.1 361753 361679 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome
47 (33) ! 3.8e-12 51.1 0.0 NC_013790.1 360983 360912 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome
48 (34) ! 5.9e-12 50.5 0.0 NC_013790.1 361456 361383 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome
49 (35) ! 7.4e-12 50.1 0.0 NC_013790.1 362798 362727 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome
50 (36) ! 8.7e-12 49.9 0.0 NC_013790.1 917722 917793 + cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome
51 (37) ! 1.1e-11 49.7 0.0 NC_013790.1 2583869 2583798 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome
52 (38) ! 1.3e-11 49.4 0.0 NC_013790.1 362324 362252 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome
53 (39) ! 1.3e-11 49.3 0.0 NC_013790.1 360811 360740 - cm no 0.42 Methanobrevibacter ruminantium M1 chromosome, complete genome
54 (40) ! 4.3e-11 47.7 0.0 NC_013790.1 1160526 1160609 + cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome
55 (41) ! 9.8e-11 46.6 0.0 NC_013790.1 362403 362331 - cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome
56 (42) ! 1.1e-10 46.5 0.0 NC_013790.1 2327124 2327042 - cm no 0.63 Methanobrevibacter ruminantium M1 chromosome, complete genome
57 (43) ! 1.2e-10 46.4 0.0 NC_013790.1 995344 995263 - cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome
58 (44) ! 2.3e-10 45.5 0.0 NC_013790.1 256772 256696 - cm no 0.57 Methanobrevibacter ruminantium M1 chromosome, complete genome
59 (45) ! 2.5e-10 45.3 0.0 NC_013790.1 2584830 2584758 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome
60 (46) ! 6.1e-10 44.1 0.0 NC_013790.1 2351071 2350997 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome
61 (47) ! 6.5e-10 44.0 0.0 NC_013790.1 362552 362482 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome
62 (48) ! 5.2e-09 41.2 0.0 NC_013790.1 1064775 1064858 + cm no 0.63 Methanobrevibacter ruminantium M1 chromosome, complete genome
63 (49) ! 1.2e-08 40.0 0.0 NC_013790.1 361222 361150 - cm no 0.45 Methanobrevibacter ruminantium M1 chromosome, complete genome
64 (50) ! 1.2e-08 40.0 0.0 NC_013790.1 361369 361297 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome
65 (51) ! 4.8e-08 38.1 0.0 NC_013790.1 361596 361513 - cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome
66 (52) ! 3.2e-07 35.5 0.0 NC_013790.1 1913310 1913227 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome
67 (53) ! 2.6e-06 32.7 0.0 NC_013790.1 363464 363381 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome
68 (54) ! 3e-06 32.5 0.0 NC_013790.1 2584954 2584872 - cm no 0.58 Methanobrevibacter ruminantium M1 chromosome, complete genome
69 ------ inclusion threshold ------
70 (55) ? 0.027 20.0 0.0 NC_013790.1 363803 363716 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome
71 (56) ? 3.4 13.4 0.0 NC_013790.1 984373 984304 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome
72
73
74 Hit alignments:
75 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
76 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
77 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
78 (1) ! 1.3e-18 71.5 0.0 cm 1 72 [] 362026 361955 - .. 1.00 no 0.50
79
80 v v v v NC
81 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
82 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
83 G: G::AUAGC:CA+UGG AG:GCG:::G:CUG+CA :C:::AGGU : GGGUUCGAUUCCC :U::C :CA
84 NC_013790.1 362026 GGAGCUAUAGCUCAAUGGCAGAGCGUUUGGCUGACAUCCAAAAGGUUAUGGGUUCGAUUCCCUUUAGCCCCA 361955
85 ************************************************************************ PP
86
87 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
88 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
89 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
90 (2) ! 3.3e-18 70.2 0.0 cm 1 72 [] 2585265 2585193 - .. 1.00 no 0.60
91
92 v v NC
93 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
94 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
95 GCCG:C:UAGC:CAGU GGUAG:GCG ::G:CUGU AA:C:: GGUC:::GGUUCGA +CC::::G:CGGC+
96 NC_013790.1 2585265 GCCGUCGUAGCUCAGUaGGUAGAGCGUUCGGCUGUUAACCGAUUGGUCACAGGUUCGAGCCCUGUCGACGGCG 2585193
97 ************************************************************************* PP
98
99 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
100 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
101 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
102 (3) ! 9e-18 68.8 0.0 cm 1 72 [] 762490 762562 + .. 1.00 no 0.67
103
104 NC
105 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
106 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
107 G::::C UAGC:CAGU GG AG:GCGC:::CCU+ CAAG:::GAGG CC:GGGUUC A UCCC:G G::::CA
108 NC_013790.1 762490 GGGCCCGUAGCUCAGUuGGGAGAGCGCUGCCCUUGCAAGGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA 762562
109 ************************************************************************* PP
110
111 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
112 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
113 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
114 (4) ! 9e-18 68.8 0.0 cm 1 72 [] 2041704 2041632 - .. 1.00 no 0.67
115
116 NC
117 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
118 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
119 G::::C UAGC:CAGU GG AG:GCGC:::CCU+ CAAG:::GAGG CC:GGGUUC A UCCC:G G::::CA
120 NC_013790.1 2041704 GGGCCCGUAGCUCAGUuGGGAGAGCGCUGCCCUUGCAAGGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA 2041632
121 ************************************************************************* PP
122
123 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
124 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
125 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
126 (5) ! 2.5e-17 67.4 0.0 cm 1 72 [] 2351254 2351181 - .. 1.00 no 0.62
127
128 NC
129 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
130 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
131 GCC :::U+GC:CAGU GGUAG:GCGC:AG:CU+ AA:CU:G GGUC :GGGUUC AUUCCC: ::: GGC
132 NC_013790.1 2351254 GCCUCGGUGGCUCAGUcuGGUAGAGCGCGAGACUUGUAAUCUCGUGGUCGCGGGUUCAAUUCCCGUCCGGGGCU 2351181
133 ************************************************************************** PP
134
135 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
136 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
137 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
138 (6) ! 3e-17 67.2 0.0 cm 1 72 [] 735136 735208 + .. 1.00 no 0.59
139
140 NC
141 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
142 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
143 GCC::::U+GC:CAG GGUAG:GCGC:A:C+UG AAG:U:GA GUC:GGGGUUCGA UCCCC:::::GGC
144 NC_013790.1 735136 GCCUUAGUGGCUCAGCcGGUAGAGCGCUACCUUGGUAAGGUAGAAGUCGGGGGUUCGAAUCCCCCCUAAGGCU 735208
145 ************************************************************************* PP
146
147 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
148 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
149 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
150 (7) ! 5.2e-17 66.4 0.0 cm 1 72 [] 2186013 2185941 - .. 1.00 no 0.53
151
152 NC
153 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
154 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
155 GCC::::UAG::CAGU GG AG::CGCCAG:CUG+++A:CUGGA GUC:::GGUUC A UCC:::::::GGCA
156 NC_013790.1 2186013 GCCAUGUUAGUUCAGUuGGGAGAACGCCAGACUGAAGAUCUGGAUGUCGCUGGUUCAAGUCCGGCACAUGGCA 2185941
157 ************************************************************************* PP
158
159 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
160 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
161 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
162 (8) ! 1.6e-16 64.8 0.0 cm 1 72 [] 2350593 2350520 - .. 1.00 no 0.66
163
164 NC
165 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
166 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
167 G::::C:UAGC:CAGU GG AG:GCGC::G:CU+U AA:C::G GG C :GGGUUC AUUCCC: :G::::C+
168 NC_013790.1 2350593 GGGCCCGUAGCUCAGUcuGGCAGAGCGCUUGGCUUUUAACCAAGCGGCCGCGGGUUCAAUUCCCGUCGGGCCCG 2350520
169 ************************************************************************** PP
170
171 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
172 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
173 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
174 (9) ! 2.8e-16 64.1 0.0 cm 1 72 [] 2585187 2585114 - .. 1.00 no 0.59
175
176 NC
177 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
178 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
179 G::::CAUAGC::AG GGUA::GCGC :G:CU + AA:C: GA GUC::GGGUUCGA UCCC::UG::::CA
180 NC_013790.1 2585187 GGGCCCAUAGCUUAGCcaGGUAGAGCGCUCGGCUCAUAACCGGGAUGUCAUGGGUUCGAAUCCCAUUGGGCCCA 2585114
181 ************************************************************************** PP
182
183 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
184 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
185 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
186 (10) ! 9.1e-16 62.5 0.0 cm 1 72 [] 662185 662259 + .. 1.00 no 0.61
187
188 v v NC
189 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
190 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
191 :::::::U+GC CAG GGU AG GCGC::G:CUG+ AA:C::GAGGUCC:GGGUUCGA UCCC:G:::::::A
192 NC_013790.1 662185 AGGCUAGUGGCACAGCcuGGUcAGCGCGCACGGCUGAUAACCGUGAGGUCCUGGGUUCGAAUCCCAGCUAGCCUA 662259
193 ***************999********************************************************* PP
194
195 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
196 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
197 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
198 (11) ! 1.2e-15 62.1 0.0 cm 1 72 [] 360887 360815 - .. 1.00 no 0.55
199
200 v v NC
201 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
202 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
203 G:::: :U+G:::A+U GGUA:::CG:C::CCU+ C+AG::G:AG+ ::GGGUUCGA UCCC::: ::::CA
204 NC_013790.1 360887 GGGCCUGUGGUCUAAUuGGUAUGACGUCUCCCUUGCGAGGAGAAGACUUUGGGUUCGACUCCCAACUGGUCCA 360815
205 ************************************************************************* PP
206
207 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
208 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
209 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
210 (12) ! 1.6e-15 61.7 0.0 cm 1 72 [] 2350984 2350911 - .. 1.00 no 0.53
211
212 NC
213 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
214 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
215 :CCG:C:UAGC:CA+U GG AG:GCG:::G:CUGU++A:C:::A GU :::GGUUC A UCC::::G:CGG:A
216 NC_013790.1 2350984 CCCGACUUAGCUCAAUuuGGCAGAGCGUUGGACUGUAGAUCCAAAUGUUGCUGGUUCAAGUCCGGCAGUCGGGA 2350911
217 ************************************************************************** PP
218
219 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
220 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
221 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
222 (13) ! 3.3e-15 60.7 0.0 cm 1 72 [] 2186090 2186019 - .. 1.00 no 0.54
223
224 NC
225 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
226 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
227 G::::: U+::::AG GGUA::::+CC::C+UG+CA G::GG G+UC::G:GUUCGA UC:C:: :::::CA
228 NC_013790.1 2186090 GGACCGGUGGUCUAGGGGUAUGAUACCUCCUUGACAUGGAGGUGAUCACGAGUUCGAAUCUCGUUCGGUCCA 2186019
229 ************************************************************************ PP
230
231 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
232 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
233 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
234 (14) ! 4.1e-15 60.4 0.0 cm 1 72 [] 2680159 2680233 + .. 0.99 no 0.67
235
236 NC
237 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
238 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
239 G::::C:UAGC::AG GG A::GCG:C:G:CU+ AA:C:G:AGG CC:GGGUUC A UCCC:G:G::::C+
240 NC_013790.1 2680159 GGGCCCGUAGCCUAGCcuGGAuAGGGCGUCGGACUUCUAAUCCGAAGGCCCCGGGUUCAAAUCCCGGCGGGUCCG 2680233
241 ***************9999999***************************************************** PP
242
243 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
244 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
245 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
246 (15) ! 7.9e-15 59.5 0.0 cm 1 72 [] 2749839 2749768 - .. 1.00 no 0.53
247
248 NC
249 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
250 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
251 G::::C:U+::::AG GGUA::::+:C:::CU++CAA:::G: G+UC::G:GUUCGA UC:C:::G::::CA
252 NC_013790.1 2749839 GGUUCCGUGGUCUAGGGGUAUGAUAUCUCGCUUACAACGAGAGGAUCGUGAGUUCGAAUCUCGCCGGAACCA 2749768
253 ************************************************************************ PP
254
255 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
256 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
257 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
258 (16) ! 7.9e-15 59.5 0.0 cm 1 72 [] 2749945 2749874 - .. 1.00 no 0.53
259
260 NC
261 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
262 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
263 G::::C:U+::::AG GGUA::::+:C:::CU++CAA:::G: G+UC::G:GUUCGA UC:C:::G::::CA
264 NC_013790.1 2749945 GGUUCCGUGGUCUAGGGGUAUGAUAUCUCGCUUACAACGAGAGGAUCGUGAGUUCGAAUCUCGCCGGAACCA 2749874
265 ************************************************************************ PP
266
267 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
268 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
269 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
270 (17) ! 9.8e-15 59.2 0.0 cm 1 72 [] 361676 361604 - .. 1.00 no 0.51
271
272 NC
273 (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
274 tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
275 GC::::AU+G G:A+U GG A:C C+:C:G:CU+UC+A:C:G: + C:GGGUUC A UCCC:GU::::GCA
276 NC_013790.1 361676 GCUUCUAUGGGGUAAUcGGCaAACCCAUCGGACUUUCGAUCCGAUAA-UCCGGGUUCAAAUCCCGGUAGAAGCA 361604
277 ***********************************************.9************************* PP
278
279 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
280 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
281 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
282 (18) ! 1e-14 59.2 0.0 cm 1 72 [] 2585073 2584999 - .. 0.99 no 0.60
283
284 NC
285 (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
286 tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
287 GC::::AU+::G:AGU GG A:C:: :C:GCCU+UC+AGC:G:AG+ C :GGGUUCGA UCCC: U::::GCA
288 NC_013790.1 2585073 GCUCCGAUGGUGUAGUccGGCcaAUCAUUUCGGCCUUUCGAGCCGAAGA-CUCGGGUUCGAAUCCCGGUCGGAGCA 2584999
289 ********************9999*************************.************************** PP
290
291 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
292 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
293 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
294 (19) ! 1.1e-14 59.1 0.0 cm 1 72 [] 2130422 2130349 - .. 1.00 no 0.59
295
296 v v NC
297 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
298 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
299 GC:G:::UAG:: AG GGU A ::C C:A:CCUG CA+G:U:GAG+ CC:GGGUUC A UCCC:G:::C:GCA
300 NC_013790.1 2130422 GCGGUGUUAGUCCAGCcuGGUuAAGACUCUAGCCUGCCACGUUAGAGA-CCCGGGUUCAAAUCCCGGACGCCGCA 2130349
301 ***************999******************************.************************** PP
302
303 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
304 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
305 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
306 (20) ! 1.2e-14 58.9 0.0 cm 1 72 [] 546056 545947 - .. 0.98 no 0.61
307
308 NC
309 (((((((,,<<<<___.___._>>>>,<<<<<___~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))): CS
310 tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUg*[ 4]*gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
311 GCCGG::U+GC:CAG GGU AG:GCGC::G:CU :C::GAG+UC::GGGUUCGA UCCC::::CCGGCA
312 NC_013790.1 546056 GCCGGGGUGGCUCAGCuGGUuAGAGCGCACGGCUC*[40]*CCGUGAGAUCGCGGGUUCGAAUCCCGCCCCCGGCA 545947
313 ********************************995...*..*********************************** PP
314
315 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
316 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
317 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
318 (21) ! 3.9e-14 57.3 0.0 cm 1 72 [] 361915 361844 - .. 1.00 no 0.42
319
320 v v NC
321 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
322 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
323 G:::::AUAG:::A+ GGUA:::C+ C G:CUGU AA:C G AG+ :G :GUUCGA UC: C:U:::::C+
324 NC_013790.1 361915 GGUUCUAUAGUUUAACaGGUAAAACAACUGGCUGUUAACCGGCAGA-UAGGAGUUCGAAUCUUCUUAGAACCG 361844
325 **********************************************.9************************* PP
326
327 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
328 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
329 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
330 (22) ! 5.1e-14 57.0 0.0 cm 1 72 [] 97724 97795 + .. 1.00 no 0.49
331
332 NC
333 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
334 tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
335 ::::::AU+::G:A+UGG A:C::+C AG:CU U +A:CU G G+ C:::GGUUCGA UCC:::U::::::A
336 NC_013790.1 97724 AGUCCUAUGGUGUAAUGGCaAUCAUACGAGUCUCUGGAACUUGUGA-CUCCGGUUCGACUCCGGAUAGGACUA 97795
337 **********************************************.************************** PP
338
339 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
340 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
341 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
342 (23) ! 6.1e-14 56.7 0.0 cm 1 72 [] 2350717 2350646 - .. 1.00 no 0.68
343
344 NC
345 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
346 tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
347 GCC::::U+::G:AG GG A:C::G:::GCCUGUC+AGC::: G+ C :GGGUUC A UCCC: ::::GGC+
348 NC_013790.1 2350717 GCCCUGGUGGUGUAGGGGCuAUCAUGUGGGCCUGUCGAGCCCGCGA-CUCGGGUUCAAAUCCCGGCCAGGGCG 2350646
349 ******************99**************************.************************** PP
350
351 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
352 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
353 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
354 (24) ! 8e-14 56.3 0.0 cm 1 72 [] 1873887 1873815 - .. 1.00 no 0.64
355
356 v v NC
357 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
358 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
359 G::::: UAG :CAG GG AG: CG:C::C+UG CA G::G:AGG CC:GGGUUC A UCCC:G :::::CA
360 NC_013790.1 1873887 GGGCUGGUAGCUCAGAuGGGAGAUCGUCGCCUUGGCAUGGCGGAGGCCCCGGGUUCAAAUCCCGGUCAGUCCA 1873815
361 ***************99******************************************************** PP
362
363 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
364 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
365 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
366 (25) ! 1.4e-13 55.6 0.0 cm 1 72 [] 360730 360659 - .. 1.00 no 0.40
367
368 NC
369 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
370 tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
371 G::G::AUA::::A+ GG A::::GC::G:CU ++A:C::GAG+ :: :GUUCGA UC: ::U::C::CA
372 NC_013790.1 360730 GAAGAUAUAGUUUAACGGCaAGAAUGCUUGGCUCCAGACCAAGAGA-UGAGAGUUCGAAUCUUUCUAUCUUCA 360659
373 **********************************************.9************************* PP
374
375 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
376 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
377 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
378 (26) ! 3.5e-13 54.3 0.0 cm 1 72 [] 2680310 2680384 + .. 0.99 no 0.52
379
380 NC
381 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
382 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
383 :::::::UAGC::AG GG A::GCG::AG:CU AA:CU::AG+ C::GGGUUC A UCCC:::::::::+
384 NC_013790.1 2680310 AGGCUUGUAGCCUAGCuuGGAuAAGGCGUUAGACUCCUAAUCUAAAGACCGCGGGUUCAAAUCCCGCCAAGCCUG 2680384
385 ***************9999999***************************************************** PP
386
387 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
388 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
389 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
390 (27) ! 3.6e-13 54.3 0.0 cm 1 72 [] 2664806 2664732 - .. 1.00 no 0.60
391
392 NC
393 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
394 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
395 ::C:G::U+G G:AGU GGU A:C CGC::G:CU + AA:C::GAG+ CC:::GUUC A UC:::G::C:G::A
396 NC_013790.1 2664806 AGCAGGGUGGGGUAGUcuGGUgAUCCCGCGGGGCUCAUAACCCCGAGAGCCCUAGUUCAAAUCUAGGCCCUGCUA 2664732
397 *************************************************************************** PP
398
399 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
400 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
401 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
402 (28) ! 3.6e-13 54.3 0.0 cm 1 72 [] 361061 360989 - .. 1.00 no 0.41
403
404 NC
405 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
406 tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
407 :: ::AUAGC::A+ GG A::GC+:C:::CU +A:::G:AG+U :GGGUUC A UCCC: U:: :: A
408 NC_013790.1 361061 GGAUCUAUAGCUUAACGGAaAAAGCAUCUAGCUACGGACUAGAAGAUUGUGGGUUCAAAUCCCAUUAGGUCUA 360989
409 *******************9***************************************************** PP
410
411 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
412 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
413 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
414 (29) ! 7.5e-13 53.3 0.0 cm 1 72 [] 2130335 2130262 - .. 1.00 no 0.55
415
416 NC
417 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
418 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
419 GC:G:::U+G:::AGU GGU A:::C : :GCCU+ CAAGC: : + CC:GGGUUCGA UCCC:G:::C:GCA
420 NC_013790.1 2130335 GCAGCUGUGGUAUAGUcuGGUuAUUACUUGGGCCUUCCAAGCCUACAA-CCCGGGUUCGAAUCCCGGCAGCUGCA 2130262
421 ************************************************.************************** PP
422
423 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
424 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
425 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
426 (30) ! 7.6e-13 53.3 0.0 cm 1 72 [] 2151672 2151745 + .. 1.00 no 0.65
427
428 vv vv NC
429 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
430 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
431 G::::C:UAGC:CAGU GG AG:GCGC G:CU U AA:C G GUC :GGGUUC AU+CCC: :G::::C+
432 NC_013790.1 2151672 GGGCCCGUAGCUCAGUcuGGCAGAGCGCUUGGCUCUUAACCUUGUUGUCGCGGGUUCAAUCCCCGUCGGGCCCG 2151745
433 ************************************************************************** PP
434
435 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
436 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
437 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
438 (31) ! 2.9e-12 51.4 0.0 cm 1 72 [] 319297 319370 + .. 0.99 no 0.62
439
440 NC
441 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
442 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
443 GCC::::U+G:G:AG GG A:C:CG:::G:CUG +A:C::: CC:GGGUUC A UCCC:G::::GGCA
444 NC_013790.1 319297 GCCCUGGUGGUGUAGCuuGGAuAACACGUGGGACUGCGGAUCCCAUUC-CCCGGGUUCAAAUCCCGGCCAGGGCA 319370
445 ***************9999999************************99.************************** PP
446
447 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
448 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
449 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
450 (32) ! 3.7e-12 51.1 0.0 cm 1 72 [] 361753 361679 - .. 0.98 no 0.55
451
452 v v NC
453 (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
454 tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
455 G :::::U+GC AGU G U A GCG:C:G:CU+U AA:C:G:AG+UC: GGGUUC A UCCC :::::: CA
456 NC_013790.1 361753 GGGCCUGUGGCUAAGUcuGAUcAAGGCGUCCGGCUUUUAACCGGAAGAUCAGGGGUUCAAAUCCCUUCAGGCUCA 361679
457 ****************9888899**************************************************** PP
458
459 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
460 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
461 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
462 (33) ! 3.8e-12 51.1 0.0 cm 1 72 [] 360983 360912 - .. 1.00 no 0.50
463
464 v v NC
465 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
466 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
467 GC:::::UA :G:A+U GG A:C: C ::CCU+ CAAG:: GA + C:GGGUUCGA UCCC:G:::::GCA
468 NC_013790.1 360983 GCUUUAGUACUGUAAUuGGCAACACCCGCCCCUUCCAAGGGUGAAA-UCUGGGUUCGAAUCCCAGCUAAAGCA 360912
469 **********************************************.9************************* PP
470
471 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
472 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
473 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
474 (34) ! 5.9e-12 50.5 0.0 cm 1 72 [] 361456 361383 - .. 1.00 no 0.50
475
476 v v NC
477 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
478 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
479 :::::::U+GC: AG GGUA :GCGC::G CUG+ A C::G G+UC :GGGUUC A UCCC: :::::::A
480 NC_013790.1 361456 UGGUCUGUGGCCAAGCauGGUAAGGCGCUUGUCUGAUAUGCAAGUGAUCGAGGGUUCAAAUCCCUUCAGACCAA 361383
481 ***************999******************************************************** PP
482
483 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
484 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
485 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
486 (35) ! 7.4e-12 50.1 0.0 cm 1 72 [] 362798 362727 - .. 1.00 no 0.51
487
488 v v v v NC
489 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
490 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
491 G::::::UAGC: AG GG A :GCG:CAG CUG+++A CUG: +UC:::GGUUC A UCC:::::::::CA
492 NC_013790.1 362798 GGGGCAUUAGCUAAGCGGGAAAGCGACAGUCUGAAGAUCUGUUCAUCGCUGGUUCAAAUCCAGCAUGUCCCA 362727
493 ************************************************************************ PP
494
495 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
496 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
497 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
498 (36) ! 8.7e-12 49.9 0.0 cm 1 72 [] 917722 917793 + .. 1.00 no 0.61
499
500 v v NC
501 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
502 tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
503 :::::C:U+: G:AGUGGU A:C : C G:CU+U +A:C GAG+ C G:GGUUCGA UCC:C :G:::::A
504 NC_013790.1 917722 AGUCCCGUGGGGUAGUGGUaAUCCUUCUAGGCUUUGGACCCGGAGA-CGGCGGUUCGACUCCGCUCGGGACUA 917793
505 **********************************************.************************** PP
506
507 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
508 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
509 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
510 (37) ! 1.1e-11 49.7 0.0 cm 1 72 [] 2583869 2583798 - .. 0.99 no 0.51
511
512 NC
513 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
514 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
515 GCC:::AUAGC::AG GG ::GCG:::G:CUG ++A:C::: C: G:GUUC A UC:C :U:::GGC
516 NC_013790.1 2583869 GCCAAGAUAGCUUAGAGGCGAAGCGGUUGGCUGCAGACCAAUUACACGGGAGUUCAAAUCUCUCUCUUGGCU 2583798
517 *******************9**************************************************** PP
518
519 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
520 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
521 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
522 (38) ! 1.3e-11 49.4 0.0 cm 1 72 [] 362324 362252 - .. 1.00 no 0.51
523
524 NC
525 (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
526 tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
527 ::::::AU+::G:A+ GG A:C:: CC:G:CU+U +A:C:GGAG+ ::::GUUCGA C::::U::::::A
528 NC_013790.1 362324 AGUUCUAUGGUGUAACuGGCaAUCAUUCCGGGCUUUGGACCCGGAGA-UUCCCGUUCGAGACGGGAUAGAACUA 362252
529 ***********************************************.9************************* PP
530
531 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
532 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
533 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
534 (39) ! 1.3e-11 49.3 0.0 cm 1 72 [] 360811 360740 - .. 0.99 no 0.42
535
536 NC
537 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
538 tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
539 GC: :::U+ :G:A+U GG A:C: +C::::CU+ AA::::GA C:GGGUUC A UCCC:G::: :GC
540 NC_013790.1 360811 GCUUUAGUGUUGUAAUuGGAAACAAACACCUCUUCUAAAGGUGAAU-UCUGGGUUCAAGUCCCAGCUAGAGCU 360740
541 ********************************************66.************************** PP
542
543 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
544 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
545 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
546 (40) ! 4.3e-11 47.7 0.0 cm 1 72 [] 1160526 1160609 + .. 0.97 no 0.60
547
548 NC
549 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS
550 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72
551 GCCG::AUAG ::AG GGUA:: CGC::G:CUG +AA:C::G G+ UCC:GGGUUC A UCCC:GU::CGGC+
552 NC_013790.1 1160526 GCCGAGAUAGUCUAGCcuGGUAAGGCGCGGGACUGGAAAUCCCGUGAgggaaaccucUCCUGGGUUCAAAUCCCAGUCUCGGCG 1160609
553 ***************999***************************9878888888889************************** PP
554
555 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
556 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
557 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
558 (41) ! 9.8e-11 46.6 0.0 cm 1 72 [] 362403 362331 - .. 1.00 no 0.49
559
560 v v NC
561 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
562 tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
563 G:::: :UAG:G:AGUGGU A:C:C :::GC+U+ +AGC:::A + C :::GUUC A UC::: : ::::CA
564 NC_013790.1 362403 GGGAUUGUAGUGUAGUGGUcuAGCACCGUCGCUUUGGGAGCGACAAA-CUCAAGUUCAAAUCUUGGCUAUCCCA 362331
565 ***********************************************.************************** PP
566
567 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
568 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
569 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
570 (42) ! 1.1e-10 46.5 0.0 cm 1 72 [] 2327124 2327042 - .. 0.93 no 0.63
571
572 NC
573 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,.,.........,<<<<<_______>>>>>))))))): CS
574 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg.U.........CCgggGUUCGAUUCcccGUgccgGca 72
575 GCCG::AUAG ::AG GGUA:: CGC::G:CU+ +AA:C::G GG CC:GGGUUC A UCCC:GU::CGGC+
576 NC_013790.1 2327124 GCCGAGAUAGUCUAGCcuGGUAAGGCGCGGGACUUGAAAUCCCGUGGg-uaccccccgCCUGGGUUCAAAUCCCAGUCUCGGCG 2327042
577 ***************999***************************973.455555555************************** PP
578
579 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
580 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
581 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
582 (43) ! 1.2e-10 46.4 0.0 cm 1 72 [] 995344 995263 - .. 0.93 no 0.49
583
584 v v NC
585 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,........,,<<<<<_______>>>>>))))))): CS
586 tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGg........UCCgggGUUCGAUUCcccGUgccgGca 72
587 :::G:CAUAGCG AG GGU A CGCG:CAG:CU +++A:CUG: G+ UC:GGGGUUCGA UCCCC:UG:C:::A
588 NC_013790.1 995344 AGAGACAUAGCGAAGCGGUcaAACGCGGCAGACUCAAGAUCUGUUGAuuaguucuUCAGGGGUUCGAAUCCCCUUGUCUCUA 995263
589 **********************************************9444444445************************** PP
590
591 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
592 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
593 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
594 (44) ! 2.3e-10 45.5 0.0 cm 1 72 [] 256772 256696 - .. 0.95 no 0.57
595
596 v v NC
597 (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____.__>>>>>))))))): CS
598 tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGA.UUCcccGUgccgGca 72
599 G :::AUAG:::AGU GG A:::CG:::G:CU+ +A:C:::AGGUC:GGGGUUC A U+CCCC:U::: C
600 NC_013790.1 256772 GGGCCUAUAGUCUAGUcaGGAuuAUGACGUGGGACUUCGGAUCCCAAGGUCGGGGGUUCAAaUCCCCCCUAGGGUCC 256696
601 *****************988889************************************8626688999******** PP
602
603 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
604 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
605 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
606 (45) ! 2.5e-10 45.3 0.0 cm 1 72 [] 2584830 2584758 - .. 1.00 no 0.64
607
608 NC
609 (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
610 tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
611 GCCGG :UA: G:AG GGU A:C :+C :G:CUGU +A:C: G G+ C :G GUUC A UC C: : CCGGC
612 NC_013790.1 2584830 GCCGGGGUAGGGUAGGcGGUcAUCCUACGGGACUGUGGAUCCUGUGA-CUCGGGUUCAAAUCUCGGCUCCGGCC 2584758
613 ***********************************************.************************** PP
614
615 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
616 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
617 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
618 (46) ! 6.1e-10 44.1 0.0 cm 1 72 [] 2351071 2350997 - .. 0.99 no 0.59
619
620 NC
621 (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
622 tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
623 G::::CAUA: G:AG GGU A:C : : :GC+U+ +AGC: :AG+ C ::GGUUC A UCC:: UG::::CA
624 NC_013790.1 2351071 GGGACCAUAGGGUAGCuuGGUcgAUCCUUUGGGCUUUGGGAGCCUGAGA-CUCCGGUUCAAAUCCGGGUGGUCCCA 2350997
625 ***************999*******************************.************************** PP
626
627 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
628 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
629 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
630 (47) ! 6.5e-10 44.0 0.0 cm 1 72 [] 362552 362482 - .. 0.99 no 0.55
631
632 v v NC
633 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
634 tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
635 ::C G::UAGC: AGUGGU :GCG:C:G:CUGU++A:C:G: + : GGGUUCGA UCCC :::C G::A
636 NC_013790.1 362552 CUCUGUGUAGCAAAGUGGUUAUGCGGCGGUCUGUAGAACCGUUUA-UGGGGGUUCGAAUCCCUCCGCGGAGA 362482
637 *******************679***********************.9************************* PP
638
639 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
640 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
641 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
642 (48) ! 5.2e-09 41.2 0.0 cm 1 72 [] 1064775 1064858 + .. 0.97 no 0.63
643
644 v v NC
645 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,..........,<<<<<_______>>>>>))))))): CS
646 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgU..........CCgggGUUCGAUUCcccGUgccgGca 72
647 G CGG:AU+GC: AG GGUA :GCG:C:G:CUG AA:C:G: G+U CCGGGGUUC A UCCCCGU:CCG C+
648 NC_013790.1 1064775 GUCGGGAUGGCCCAGCcuGGUACGGCGUCGGACUGCUAAUCCGAUGAUcaauagaucgCCGGGGUUCAAAUCCCCGUCCCGGCG 1064858
649 ***************999****************************988888888899************************** PP
650
651 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
652 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
653 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
654 (49) ! 1.2e-08 40.0 0.0 cm 1 72 [] 361222 361150 - .. 0.98 no 0.45
655
656 NC
657 (((((((,,<<<<.______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
658 tRNA5 1 gCcggcAUAGcgc.AgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
659 G: ::::U+::G: A+UGG A:C::+C:AG CUGU +A CU:G GG ::GGGUUC A UCCC:::::: :C
660 NC_013790.1 361222 GAUGCAUUGGUGUuAAUGGCuAGCAUACAAGUCUGUGGAGCUUGUGG-AAAGGGUUCAAAUCCCUUAUGUGUCC 361150
661 ************85778**99**************************.************************** PP
662
663 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
664 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
665 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
666 (50) ! 1.2e-08 40.0 0.0 cm 1 72 [] 361369 361297 - .. 0.99 no 0.60
667
668 NC
669 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
670 tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
671 G C::::UA::::AGUGG A:::: C: G:+ GUCA :C :G + CC:GGGUUCGA UCCC:G::::G C+
672 NC_013790.1 361369 GUCUCUGUAGUAUAGUGGCcuAGUAUCCAUGGUGGUCAGCCGUGGUA-CCCGGGUUCGAAUCCCGGCGGAGGCG 361297
673 ******************99************************999.************************** PP
674
675 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
676 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
677 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
678 (51) ! 4.8e-08 38.1 0.0 cm 1 72 [] 361596 361513 - .. 0.84 no 0.61
679
680 NC
681 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,..,.........,,<<<<<_______>>>>>))))))): CS
682 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAG..g.........UCCgggGUUCGAUUCcccGUgccgGca 72
683 G:CG:::U+GC::AG GGUA::GCG:::G CUG AA C::: G UC::GGGUUC A UCCC:::::CG:C+
684 NC_013790.1 361596 GGCGUGGUGGCCUAGCucGGUAGGGCGGAGGGCUGCUAAUCCUCUGcg-auaaaacgcUCAUGGGUUCAAAUCCCAUCCACGCCG 361513
685 **************************9888888888888888887522.2333333339************************** PP
686
687 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
688 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
689 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
690 (52) ! 3.2e-07 35.5 0.0 cm 1 72 [] 1913310 1913227 - .. 0.96 no 0.64
691
692 v v NC
693 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS
694 tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72
695 GC:GG::U+G : AG GGU A : CGC:AG:+UG+ + :CU:G GG UC :GGGUUCGAUUCCC: ::CC:GCA
696 NC_013790.1 1913310 GCAGGGGUGGUCGAGCGGUcaAAGGCGCUAGGUUGAGGGCCUAGUGGguuagucccuUCGCGGGUUCGAUUCCCGUCCCCUGCA 1913227
697 **********************************************888888888889************************** PP
698
699 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
700 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
701 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
702 (53) ! 2.6e-06 32.7 0.0 cm 1 72 [] 363464 363381 - .. 0.96 no 0.51
703
704 v v NC
705 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS
706 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72
707 ::C:G::UAGC AG GGUA GC+C::G:CU++++A:C::G G+ UC::GGGUUC A UCCC::::C:G::A
708 NC_013790.1 363464 AGCCGAGUAGCUAAGCuuGGUAAGGCACUGGACUUAAGAUCCAGGGAguuagucuccUCAUGGGUUCAAAUCCCGUCUCGGCUA 363381
709 ***************999**************************99888888888889************************** PP
710
711 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
712 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
713 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
714 (54) ! 3e-06 32.5 0.0 cm 1 72 [] 2584954 2584872 - .. 0.97 no 0.58
715
716 v v NC
717 (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,.........,<<<<<_______>>>>>))))))): CS
718 tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgU.........CCgggGUUCGAUUCcccGUgccgGca 72
719 GC::G :U+ C: AG GG A :G G:CAG:CU++ +A:CUG: G+U CC:GGGUUCGA UCCC:G: C::GCA
720 NC_013790.1 2584954 GCGAGGGUGUCCGAGAGGCcaAAGGAGACAGGCUUAGGACCUGUUGAUgcagaucuaCCAGGGUUCGAAUCCCUGCUCUCGCA 2584872
721 ******************9999************************98888888888************************** PP
722
723 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
724 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
725 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
726 (55) ? 0.027 20.0 0.0 cm 1 72 [] 363803 363716 - .. 0.71 no 0.50
727
728 vvvvv vvvvv NC
729 (((((((,,<~~~~~~>,<<<<<_~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))): CS
730 tRNA5 1 gCcggcAUAG*[13]*Cgccagcc*[ 6]*gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
731 ::C:G::UAG C +C + +UC::GGGUUC A UCCC::::C:G::A
732 NC_013790.1 363803 AGCUGUGUAG*[22]*C---GGAC*[17]*-AGUCUCAUCAUGGGUUCAAAUCCCAUCGCAGCUA 363716
733 ********96...5..3...3333...5...34456679************************** PP
734
735 >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome
736 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc
737 ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ----
738 (56) ? 3.4 13.4 0.0 cm 1 72 [] 984373 984304 - .. 0.95 no 0.53
739
740 vvv vv vv vvv NC
741 (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS
742 tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72
743 : ::GC U+:C:CA U GG AG:G:GC G:+U U AA:C G G CG: G UC A UC :CG :: :A
744 NC_013790.1 984373 CUGAGCGUGGCUCACUauGGCAGAGUGCUUGGUUCUUAACCUUGUUG-UCGAGGGUCCAAUCUUCG---UCGGA 984304
745 **************9999*****************************.899999999999999999...799** PP
746
747
748
749 Internal CM pipeline statistics summary:
750 ----------------------------------------
751 Query model(s): 1 (72 consensus positions)
752 Target sequences: 1 (5874406 residues searched)
753 Target sequences re-searched for truncated hits: 1 (360 residues re-searched)
754 Windows passing local HMM SSV filter: 11197 (0.2108); expected (0.35)
755 Windows passing local HMM Viterbi filter: (off)
756 Windows passing local HMM Viterbi bias filter: (off)
757 Windows passing local HMM Forward filter: 140 (0.002747); expected (0.005)
758 Windows passing local HMM Forward bias filter: 139 (0.002728); expected (0.005)
759 Windows passing glocal HMM Forward filter: 88 (0.001973); expected (0.005)
760 Windows passing glocal HMM Forward bias filter: 88 (0.001973); expected (0.005)
761 Envelopes passing glocal HMM envelope defn filter: 101 (0.001358); expected (0.005)
762 Envelopes passing local CM CYK filter: 60 (0.0007629); expected (0.0001)
763 Total CM hits reported: 56 (0.0007205); includes 0 truncated hit(s)
764
765 # CPU time: 2.66u 0.04s 00:00:02.70 Elapsed: 00:00:01.77
766 //
767 [ok]