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author bgruening
date Tue, 22 Apr 2014 13:56:22 -0400
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+================================================
+Galaxy wrapper for Infernal prediction tools
+================================================
+
+Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases 
+for RNA structure and sequence similarities. It is an implementation of a special 
+case of profile stochastic context-free grammars called covariance models (CMs). 
+A CM is like a sequence profile, but it scores a combination of sequence consensus 
+and RNA secondary structure consensus, so in many cases, it is more capable of 
+identifying RNA homologs that conserve their secondary structure more than their 
+primary sequence. 
+
+This wrapper is copyright 2013 by:
+ * Bjoern Gruening
+
+
+This prepository contains wrapper for the Infernal_ command line tool.
+
+.. _Infernal: http://infernal.janelia.org/
+
+
+The recommended citation for using Infernal 1.1 is E. P. Nawrocki and S. R. Eddy, Infernal 1.1: 100-fold faster RNA homology searches , Bioinformatics 29:2933-2935 (2013).
+
+
+============
+Installation
+============
+
+Please install Infernal and the tool wrappers with the Galaxy Tool Shed from
+
+http://toolshed.g2.bx.psu.edu/view/bgruening/infernal 
+
+
+=======
+History
+=======
+
+ - v1.1.0: Initial public release
+
+
+Bug Reports
+===========
+
+You can file an issue here https://github.com/bgruening/galaxytools/issues or ask
+us on the Galaxy development list http://lists.bx.psu.edu/listinfo/galaxy-dev
+
+
+Licence (MIT)
+=============
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.