Mercurial > repos > bgruening > infernal
diff test-data/cmalign_result_mrum-tRNAs10.out @ 5:6e18e0b098cd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author | bgruening |
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date | Sat, 21 Jan 2017 17:36:57 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cmalign_result_mrum-tRNAs10.out Sat Jan 21 17:36:57 2017 -0500 @@ -0,0 +1,26 @@ +# STOCKHOLM 1.0 +#=GF AU Infernal 1.1 + +mrum-tRNA.1 GGAGCUAUAGCUCAAU..GGC..AGAGCGUUUGGCUGACAU........................................CCAAAAGGUUAUGGGUUCGAUUCCCUUUAGCCCCA +#=GR mrum-tRNA.1 PP ****************..***..******************........................................*********************************** +mrum-tRNA.2 GGGCCCGUAGCUCAGU.uGGG..AGAGCGCUGCCCUUGCAA........................................GGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA +#=GR mrum-tRNA.2 PP ****************.****..******************........................................*********************************** +mrum-tRNA.3 GGGCCCAUAGCUUAGCcaGGU..AGAGCGCUCGGCUCAUAA........................................CCGGGAUGUCAUGGGUUCGAAUCCCAUUGGGCCCA +#=GR mrum-tRNA.3 PP *********************..******************........................................*********************************** +mrum-tRNA.4 AGGCUAGUGGCACAGCcuGGU.cAGCGCGCACGGCUGAUAA........................................CCGUGAGGUCCUGGGUUCGAAUCCCAGCUAGCCUA +#=GR mrum-tRNA.4 PP ***************999***.*******************........................................*********************************** +mrum-tRNA.5 CCCGACUUAGCUCAAUuuGGC..AGAGCGUUGGACUGUAGA........................................UCCAAAUGUUGCUGGUUCAAGUCCGGCAGUCGGGA +#=GR mrum-tRNA.5 PP *********************..******************........................................*********************************** +mrum-tRNA.6 GCUUCUAUGGGGUAAU.cGGC.aAACCCAUCGGACUUUCGA........................................UCCGAUAA-UCCGGGUUCAAAUCCCGGUAGAAGCA +#=GR mrum-tRNA.6 PP ****************.****.*******************........................................********.9************************* +mrum-tRNA.7 GCUCCGAUGGUGUAGUccGGCcaAUCAUUUCGGCCUUUCGA........................................GCCGAAGA-CUCGGGUUCGAAUCCCGGUCGGAGCA +#=GR mrum-tRNA.7 PP ********************9999*****************........................................********.************************** +mrum-tRNA.8 GCGGUGUUAGUCCAGCcuGGU.uAAGACUCUAGCCUGCCAC........................................GUUAGAGA-CCCGGGUUCAAAUCCCGGACGCCGCA +#=GR mrum-tRNA.8 PP ***************999***.*******************........................................********.************************** +mrum-tRNA.9 GCCGGGGUGGCUCAGC.uGGU.uAGAGCGCACGGCUC----auaggguaacuaagcgugcucugacuuuuuuccugggauaCCGUGAGAUCGCGGGUUCGAAUCCCGCCCCCGGCA +#=GR mrum-tRNA.9 PP ****************.****.************995....678************************************************************************ +mrum-tRNA.10 GGUUCUAUAGUUUAAC.aGGU..AAAACAACUGGCUGUUAA........................................CCGGCAGA-UAGGAGUUCGAAUCUUCUUAGAACCG +#=GR mrum-tRNA.10 PP ****************.****..******************........................................********.9************************* +#=GC SS_cons (((((((,,<<<<___..___.._>>>>,<<<<<_______~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))): +#=GC RF gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca +//