Mercurial > repos > bgruening > infernal
diff test-data/cmcalibrate_input.cm @ 5:6e18e0b098cd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
| author | bgruening |
|---|---|
| date | Sat, 21 Jan 2017 17:36:57 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cmcalibrate_input.cm Sat Jan 21 17:36:57 2017 -0500 @@ -0,0 +1,570 @@ +INFERNAL1/a [1.1.2 | July 2016] +NAME dataset_838 +STATES 233 +NODES 62 +CLEN 73 +W 90 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Thu Dec 15 13:43:26 2016 +COM [1] cmbuild -F --fast --symfrac 0.5 --wpb --p7ere 0.38 --EmN 200 --EvN 200 --ElfN 200 --EgfN 200 --eent /home/wanli/galaxy/database/files/000/dataset_839.dat /home/wanli/galaxy/database/files/000/dataset_838.dat +COM [2] cmcalibrate Downloads/download.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 2 +EFFN 1.902344 +CKSUM 1256650105 +NULL 0.000 0.000 0.000 0.000 +EFP7GF -2.8151 0.73715 +ECMLC 0.80543 -3.96449 2.80237 1600000 279383 0.004295 +ECMGC 0.42297 -15.07779 -2.84171 1600000 70757 0.005653 +ECMLI 0.67085 -3.93573 3.92167 1600000 233559 0.005138 +ECMGI 0.43319 -10.87224 0.43591 1600000 53640 0.007457 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 90 110 -6.854 -8.100 -0.081 -4.553 + IL 1 1 2 1 4 3 27 91 111 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 4 29 92 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 1 ] - 74 - a - - + MR 3 2 3 5 5 5 30 90 110 -7.084 -0.039 -6.900 -7.112 -8.004 0.711 -1.386 0.490 -0.798 + D 4 2 3 5 5 1 23 88 109 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 5 5 3 5 5 3 27 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 2 ] 1 73 g c - - + MP 6 5 3 10 6 6 31 89 109 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.271 -2.721 -3.286 0.880 -2.952 -4.020 1.406 -3.346 -3.336 2.423 -3.790 -0.527 1.874 -3.393 -0.601 -2.220 + ML 7 5 3 10 6 3 25 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 8 5 3 10 6 3 25 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 9 5 3 10 6 0 20 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 10 10 5 10 6 3 26 88 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 11 11 6 11 5 3 27 88 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 2 72 C G - - + MP 12 11 6 16 6 5 30 87 107 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641 3.546 -3.756 -4.276 -0.430 -4.538 -2.386 0.568 -4.605 -0.654 -3.116 + ML 13 11 6 16 6 3 24 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 14 11 6 16 6 2 24 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 15 11 6 16 6 0 20 83 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 16 16 5 16 6 3 26 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 17 17 6 17 5 3 26 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 4 ] 3 71 g c - - + MP 18 17 6 22 6 5 29 85 105 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.399 -2.852 -3.384 0.778 -2.912 -4.071 2.215 -3.369 -3.430 2.395 -3.863 -0.655 0.991 -3.497 -0.541 -2.295 + ML 19 17 6 22 6 2 24 83 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 20 17 6 22 6 2 24 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 21 17 6 22 6 0 19 81 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 22 22 5 22 6 3 25 84 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 23 23 6 23 5 3 26 84 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 5 ] 4 70 g c - 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- + MP 90 89 6 94 6 2 2 25 44 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.267 -2.724 -3.283 0.878 -2.942 -4.019 1.414 -3.339 -3.332 2.409 -3.787 -0.532 1.888 -3.392 -0.592 -2.217 + ML 91 89 6 94 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 92 89 6 94 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 93 89 6 94 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 94 94 5 94 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 95 95 6 95 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 53 ] 54 62 G C - - + MP 96 95 6 100 4 2 2 23 42 -6.937 -7.144 -0.054 -5.558 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 + ML 97 95 6 100 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 98 95 6 100 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 99 95 6 100 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 + IL 100 100 5 100 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 101 101 6 101 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 55 - U - - - + ML 102 101 6 104 3 1 1 20 39 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 + D 103 101 6 104 3 0 0 19 38 -6.174 -1.687 -0.566 + IL 104 104 3 104 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 55 ] 56 - U - - - + ML 105 104 3 107 3 1 1 19 37 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 + D 106 104 3 107 3 0 0 18 37 -6.174 -1.687 -0.566 + IL 107 107 3 107 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 56 ] 57 - C - - - + ML 108 107 3 110 3 1 1 18 36 -7.954 -0.021 -6.608 -1.716 1.617 -2.539 -1.135 + D 109 107 3 110 3 0 0 17 36 -6.174 -1.687 -0.566 + IL 110 110 3 110 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 57 ] 58 - G - - - + ML 111 110 3 113 3 1 1 16 35 -7.954 -0.021 -6.608 -1.559 -2.775 1.719 -2.162 + D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 58 ] 59 - A - - - + ML 114 113 3 116 3 1 1 15 33 -7.954 -0.021 -6.608 1.714 -2.351 -1.985 -1.891 + D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 59 ] 60 - u - - - + ML 117 116 3 119 3 1 1 13 31 -7.954 -0.021 -6.608 -0.697 0.451 -1.474 0.728 + D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 60 ] 61 - u - - - + ML 120 119 3 122 2 1 1 1 1 * 0.000 -0.698 0.466 -1.475 0.716 + D 121 119 3 122 2 0 0 0 0 * 0.000 + IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 61 ] - - - - - - + E 123 122 3 -1 0 0 0 0 0 + [ BEGL 12 ] - - - - - - + S 124 54 1 125 1 0 4 50 69 0.000 + [ BIF 13 ] - - - - - - + B 125 124 1 126 176 0 4 50 69 + [ BEGL 14 ] - - - - - - + S 126 125 1 127 4 0 0 31 49 -0.045 -6.828 -6.235 -6.875 + [ MATP 15 ] 10 26 G C - - + MP 127 126 1 131 6 2 2 31 50 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 + ML 128 126 1 131 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 129 126 1 131 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 130 126 1 131 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 131 131 5 131 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 132 132 6 132 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 11 25 c g - - + MP 133 132 6 137 6 2 2 29 47 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.645 -3.572 -3.530 0.166 -2.488 -4.110 2.664 -3.192 -3.541 0.423 -3.935 -1.548 2.309 -3.788 -0.162 -2.413 + ML 134 132 6 137 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 135 132 6 137 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 136 132 6 137 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 137 137 5 137 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 138 138 6 138 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 12 24 g c - - + MP 139 138 6 143 6 2 2 27 45 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.267 -2.724 -3.283 0.878 -2.942 -4.019 1.414 -3.339 -3.332 2.409 -3.787 -0.532 1.888 -3.392 -0.592 -2.217 + ML 140 138 6 143 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 141 138 6 143 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 142 138 6 143 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 143 143 5 143 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 144 144 6 144 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 18 ] 13 23 c g - - + MP 145 144 6 149 4 2 2 25 43 -6.937 -7.144 -0.054 -5.558 -3.062 -2.991 -3.078 0.453 -2.412 -3.763 2.525 -2.992 -3.107 0.713 -3.560 -1.119 1.151 -3.287 -0.202 1.395 + ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 147 144 6 149 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 148 144 6 149 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 + IL 149 149 5 149 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 150 150 6 150 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 14 - A - - - + ML 151 150 6 153 3 1 1 22 40 -7.954 -0.021 -6.608 1.714 -2.351 -1.985 -1.891 + D 152 150 6 153 3 0 0 21 40 -6.174 -1.687 -0.566 + IL 153 153 3 153 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 15 - a - - - + ML 154 153 3 156 3 1 1 20 39 -7.954 -0.021 -6.608 0.698 -1.388 0.507 -0.799 + D 155 153 3 156 3 0 0 20 38 -6.174 -1.687 -0.566 + IL 156 156 3 156 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 16 - u - - - + ML 157 156 3 159 3 1 1 19 38 -7.954 -0.445 -1.937 -0.697 0.451 -1.474 0.728 + D 158 156 3 159 3 0 0 19 37 -6.174 -1.687 -0.566 + IL 159 159 3 159 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 22 ] 17 - U - - - + ML 160 159 3 162 3 1 1 18 37 -7.537 -0.028 -6.191 -0.748 -0.887 -1.429 1.318 + D 161 159 3 162 3 0 0 17 36 -7.898 -0.338 -2.290 + IL 162 162 3 162 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 23 ] 18 - G - - - + ML 163 162 3 165 3 1 1 17 35 -7.954 -0.021 -6.608 -1.559 -2.775 1.719 -2.162 + D 164 162 3 165 3 0 0 16 35 -6.174 -1.687 -0.566 + IL 165 165 3 165 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 24 ] 19 - G - - - + ML 166 165 3 168 3 1 1 15 33 -7.954 -0.021 -6.608 -1.559 -2.775 1.719 -2.162 + D 167 165 3 168 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 168 168 3 168 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 25 ] 20 - g - - - + ML 169 168 3 171 3 1 1 13 25 -1.972 -0.445 -6.608 -0.334 0.192 0.338 -0.322 + D 170 168 3 171 3 0 0 10 22 -6.174 -1.687 -0.566 + IL 171 171 3 171 3 1 1 13 25 -2.100 -0.452 -4.800 0.000 0.000 0.000 0.000 + [ MATL 26 ] 22 - A - - - + ML 172 171 3 174 2 1 1 1 1 * 0.000 1.714 -2.351 -1.985 -1.891 + D 173 171 3 174 2 0 0 0 0 * 0.000 + IL 174 174 3 174 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 27 ] - - - - - - + E 175 174 3 -1 0 0 0 0 0 + [ BEGR 28 ] - - - - - - + S 176 125 1 177 3 0 0 32 51 -7.954 -0.021 -6.608 + IL 177 177 2 177 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 29 ] 27 - a - - - + ML 178 177 2 180 5 1 1 32 51 -7.084 -0.039 -6.900 -7.112 -8.004 0.698 -1.388 0.507 -0.799 + D 179 177 2 180 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 180 180 3 180 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 28 44 c g - - + MP 181 180 3 185 6 2 2 31 50 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.715 -3.704 -3.557 -0.032 -2.461 -4.079 2.720 -3.195 -3.586 0.182 -3.949 -1.773 1.122 -3.840 1.943 -2.473 + ML 182 180 3 185 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 183 180 3 185 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 184 180 3 185 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 185 185 5 185 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 186 186 6 186 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 29 43 C G - - + MP 187 186 6 191 6 2 2 29 48 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641 3.546 -3.756 -4.276 -0.430 -4.538 -2.386 0.568 -4.605 -0.654 -3.116 + ML 188 186 6 191 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 189 186 6 191 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 190 186 6 191 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 191 191 5 191 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 192 192 6 192 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 32 ] 30 42 A U - - + MP 193 192 6 197 6 2 2 27 46 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 + ML 194 192 6 197 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 195 192 6 197 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 196 192 6 197 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 197 197 5 197 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 198 198 6 198 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 33 ] 31 41 g c - - + MP 199 198 6 203 6 2 2 25 44 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.399 -2.852 -3.384 0.778 -2.912 -4.071 2.215 -3.369 -3.430 2.395 -3.863 -0.655 0.991 -3.497 -0.541 -2.295 + ML 200 198 6 203 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 201 198 6 203 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 202 198 6 203 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 203 203 5 203 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 204 204 6 204 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 34 ] 32 40 g c - - + MP 205 204 6 209 4 2 2 23 42 -6.937 -7.144 -0.054 -5.558 -3.526 -2.500 -3.557 2.082 -3.985 -4.395 0.429 -3.836 -3.552 2.834 -4.007 -0.120 0.119 -3.682 -1.529 -2.458 + ML 206 204 6 209 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 207 204 6 209 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 208 204 6 209 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 + IL 209 209 5 209 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 210 210 6 210 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 35 ] 33 - C - - - + ML 211 210 6 213 3 1 1 20 39 -7.954 -0.021 -6.608 -1.716 1.617 -2.539 -1.135 + D 212 210 6 213 3 0 0 19 38 -6.174 -1.687 -0.566 + IL 213 213 3 213 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 34 - U - - - + ML 214 213 3 216 3 1 1 19 37 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 + D 215 213 3 216 3 0 0 18 37 -6.174 -1.687 -0.566 + IL 216 216 3 216 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 35 - u - - - + ML 217 216 3 219 3 1 1 18 36 -7.954 -0.021 -6.608 -0.363 -0.937 0.342 0.519 + D 218 216 3 219 3 0 0 17 36 -6.174 -1.687 -0.566 + IL 219 219 3 219 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 36 - u - - - + ML 220 219 3 222 3 1 1 16 35 -7.954 -0.021 -6.608 0.558 -0.842 -1.047 0.571 + D 221 219 3 222 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 222 222 3 222 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 39 ] 37 - a - - - + ML 223 222 3 225 3 1 1 15 33 -7.954 -0.021 -6.608 0.628 0.246 -1.103 -0.315 + D 224 222 3 225 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 225 225 3 225 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 40 ] 38 - a - - - + ML 226 225 3 228 3 1 1 13 31 -7.954 -0.021 -6.608 0.698 -1.388 0.507 -0.799 + D 227 225 3 228 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 228 228 3 228 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 41 ] 39 - a - - - + ML 229 228 3 231 2 1 1 1 1 * 0.000 0.628 0.246 -1.103 -0.315 + D 230 228 3 231 2 0 0 0 0 * 0.000 + IL 231 231 3 231 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 42 ] - - - - - - + E 232 231 3 -1 0 0 0 0 0 +// +HMMER3/f [3.1b3 | July 2016] +NAME dataset_838 +LENG 73 +MAXL 164 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Thu Dec 15 13:43:26 2016 +COM [1] cmbuild -F --fast --symfrac 0.5 --wpb --p7ere 0.38 --EmN 200 --EvN 200 --ElfN 200 --EgfN 200 --eent /home/wanli/galaxy/database/files/000/dataset_839.dat /home/wanli/galaxy/database/files/000/dataset_838.dat +NSEQ 2 +EFFN 1.628906 +CKSUM 1256650105 +STATS LOCAL MSV -8.5184 0.73715 +STATS LOCAL VITERBI -10.4826 0.73715 +STATS LOCAL FORWARD -2.6863 0.73715 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.47076 1.39566 1.26733 1.42298 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 1.93554 1.65715 0.96626 1.25713 1 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.82012 0.35286 2.54849 1.83556 2 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.00424 1.20191 0.98969 1.64544 3 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 1.87354 2.44340 0.41370 2.31917 4 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 5 0.53128 2.34938 1.53172 2.29704 5 A - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 6 2.58639 1.62982 2.28826 0.46633 6 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 7 1.38468 1.54821 1.52008 1.14484 7 u - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 8 2.26593 2.29030 2.76601 0.31181 8 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 9 0.23431 2.86460 2.62614 2.53179 9 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 10 2.35339 2.85006 0.24040 2.80018 10 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 11 2.36315 0.89679 2.07651 0.98716 11 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 12 1.94223 1.65192 0.97261 1.24884 12 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 13 2.11261 1.00158 1.82880 1.04648 13 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 14 0.23431 2.86460 2.62614 2.53179 14 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 15 0.91793 2.28477 1.06301 1.87441 15 a - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 16 1.81039 1.10283 2.34106 0.89586 16 u - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.33427 3.73767 1.34581 1.46634 0.26236 1.09861 0.40547 + 17 1.82572 1.94090 2.28977 0.52082 17 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.06440 3.46780 3.46780 1.46634 0.26236 0.16798 1.86670 + 18 2.30534 3.12204 0.23733 2.69597 18 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 19 2.30534 3.12204 0.23733 2.69597 19 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 20 1.57379 1.27789 1.18703 1.56547 20 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.33427 1.34581 3.73767 0.17384 1.83528 1.09861 0.40547 + 21 0.23431 2.86460 2.62614 2.53179 22 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 22 1.73793 1.99628 0.88761 1.28505 23 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 23 1.40058 1.07188 1.48214 1.69265 24 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 24 1.13668 2.23736 0.79225 2.12401 25 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 25 2.99476 0.28499 2.66857 2.05123 26 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 26 0.91793 2.28477 1.06301 1.87441 27 a - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 27 2.44995 0.86440 2.19692 0.96430 28 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 28 2.83282 0.35078 2.55365 1.83749 29 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 29 0.53070 2.35068 1.53174 2.29916 30 A - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 30 2.00633 1.20137 0.98908 1.64602 31 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 31 1.28301 2.25438 0.68949 2.15394 32 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 32 2.39558 0.32068 2.95885 2.02994 33 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 33 2.26593 2.29030 2.76601 0.31181 34 U - 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