--- a/cmsearch.xml	Sat Nov 11 16:01:09 2017 -0500
+++ b/cmsearch.xml	Thu Sep 23 19:38:58 2021 +0000
@@ -1,11 +1,12 @@
-<tool id="infernal_cmsearch" name="cmsearch" version="@VERSION@.0">
+<tool id="infernal_cmsearch" name="cmsearch" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>Search covariance model(s) against a sequence database </description>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <parallelism method="multi" split_inputs="seqdb" split_mode="to_size" split_size="500" merge_outputs="outfile,multiple_alignment_output"></parallelism>
+    <!--parallelism method="multi" split_inputs="seqdb" split_mode="to_size" split_size="500" merge_outputs="outfile,multiple_alignment_output"></parallelism-->
     <expand macro="requirements"/>
     <expand macro="stdio" />
+    <expand macro="xrefs"/>
     <command>
 <![CDATA[
         ## a temp file is needed, because the standard tabular output from infernal is not usefull in Galaxy
@@ -24,10 +25,10 @@
             $notrunc
             $anytrunc
             $nonull3
-            #if $smxsize <> 128.0
+            #if str($smxsize) != "128.0"
                 --smxsize $smxsize
             #end if
-            #if $mxsize <> 128.0
+            #if str($mxsize) != "128.0"
                 --mxsize $mxsize
             #end if
             --tblout \$temp_tabular_output
@@ -247,7 +248,6 @@
             </conditional>
             <param name="seqdb" value="cmsearch_input2.fa"/>
             <output name="outfile" file="cmsearch_result.tabular"/>
-
         </test>
     </tests>